{ "type": "genome", "identifier": "GCF_003289955.1", "organism": "Planococcus halotolerans", "title": "Planococcus halotolerans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sichuan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003289955.1", "bioproject": "PRJNA224116", "biosample": "SAMN09435489", "wgs_master": "QLZR00000000.1", "refseq_category": "reference genome", "taxid": "2233542", "species_taxid": "2233542", "organism_name": "Planococcus halotolerans", "infraspecific_name": "strain=SCU63", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/07/06", "asm_name": "ASM328995v1", "asm_submitter": "Sichuan University", "gbrs_paired_asm": "GCA_003289955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/289/955/GCF_003289955.1_ASM328995v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3622698", "genome_size_ungapped": "3622698", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "17", "contig_count": "17", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003289955.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3662", "protein_coding_gene_count": "3579", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-07-06", "dateModified": "2018-07-06", "datePublished": "2018-07-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Planococcus halotolerans" ], "sample_taxid": [ "2233542" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Gansu province" ], "sample_host_location_id": [], "data_size": "1.028 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3622698", "Number of Sequences": "17", "Longest Sequences (bp)": "939901", "N50 (bp)": "420213", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.6", "Number of CDSs": "3614", "Average Protein Length": "286.4", "Coding Ratio (%)": "85.7", "Number of rRNAs": "6", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Planococcus salinarum", "strain": "strain=DSM 23820", "accession": "GCA_001856085.1", "taxid": 622695, "species_taxid": 622695, "relation_to_type": "type", "validated": true, "ani": 82.8572, "matched_fragments": 209, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus salinarum", "strain": "strain=KCTC 13584", "accession": "GCA_007004625.1", "taxid": 622695, "species_taxid": 622695, "relation_to_type": "type", "validated": true, "ani": 82.6354, "matched_fragments": 750, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus salinarum", "strain": "strain=ISL-16", "accession": "GCA_003428865.1", "taxid": 622695, "species_taxid": 622695, "relation_to_type": "type", "validated": true, "ani": 82.5952, "matched_fragments": 741, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus donghaensis", "strain": "strain=DSM 22276", "accession": "GCA_001687665.2", "taxid": 414778, "species_taxid": 414778, "relation_to_type": "type", "validated": true, "ani": 79.1855, "matched_fragments": 250, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus wigleyi", "strain": "strain=Sa1BUA13", "accession": "GCA_014836985.1", "taxid": 2762216, "species_taxid": 2762216, "relation_to_type": "type", "validated": true, "ani": 79.0476, "matched_fragments": 362, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus glaciei", "strain": "strain=CGMCC 1.6846", "accession": "GCA_900099655.1", "taxid": 459472, "species_taxid": 459472, "relation_to_type": "type", "validated": true, "ani": 79.0387, "matched_fragments": 358, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus ruber", "strain": "strain=CGMCC 1.19134", "accession": "GCA_022819085.1", "taxid": 2027871, "species_taxid": 2027871, "relation_to_type": "type", "validated": true, "ani": 78.912, "matched_fragments": 361, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus salinus", "strain": "strain=LCB217", "accession": "GCA_003719725.1", "taxid": 1848460, "species_taxid": 1848460, "relation_to_type": "type", "validated": true, "ani": 78.898, "matched_fragments": 333, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus antarcticus", "strain": "strain=DSM 14505", "accession": "GCA_001687565.2", "taxid": 161360, "species_taxid": 161360, "relation_to_type": "type", "validated": true, "ani": 78.886, "matched_fragments": 284, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus massiliensis", "strain": "strain=ES2", "accession": "GCA_000821325.2", "taxid": 1499687, "species_taxid": 1499687, "relation_to_type": "type", "validated": true, "ani": 78.8414, "matched_fragments": 370, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus koreensis", "strain": "strain=DSM 15895", "accession": "GCA_014202615.1", "taxid": 112331, "species_taxid": 112331, "relation_to_type": "type", "validated": true, "ani": 78.8399, "matched_fragments": 359, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus koreensis", "strain": "strain=10704", "accession": "GCA_004761975.1", "taxid": 112331, "species_taxid": 112331, "relation_to_type": "type", "validated": true, "ani": 78.7646, "matched_fragments": 344, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus antarcticus", "strain": "strain=DSM 14505", "accession": "GCA_000264415.1", "taxid": 161360, "species_taxid": 161360, "relation_to_type": "type", "validated": true, "ani": 78.6752, "matched_fragments": 277, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus soli", "strain": "strain=c23", "accession": "GCA_016881065.1", "taxid": 2666072, "species_taxid": 2666072, "relation_to_type": "type", 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81.684, "matched_fragments": 604, "total_fragments": 1198, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.133, "cell_length": 0.056, "doubling_h": null, "growth_tmp": 27.636, "optimum_tmp": 26.937, "optimum_ph": 7.5, "genome_size": 3461599.112, "gc_content": 43.845, "coding_genes": 3296.062, "rRNA16S_genes": 9.375, "tRNA_genes": 72.125, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.8, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.666, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.333, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Planococcus", "halotolerans" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }