{ "type": "genome", "identifier": "GCF_003290185.1", "organism": "Chryseobacterium lathyri", "title": "Chryseobacterium lathyri", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of the Free State", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003290185.1", "bioproject": "PRJNA224116", "biosample": "SAMN09519149", "wgs_master": "QNFY00000000.1", "refseq_category": "na", "taxid": "395933", "species_taxid": "395933", "organism_name": "Chryseobacterium lathyri", "infraspecific_name": "strain=KCTC 22544", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/07/06", "asm_name": "ASM329018v1", "asm_submitter": "University of the Free State", "gbrs_paired_asm": "GCA_003290185.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/290/185/GCF_003290185.1_ASM329018v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4857652", "genome_size_ungapped": "4857652", "gc_percent": "37.000000", "replicon_count": "0", "scaffold_count": "56", "contig_count": "56", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003290185.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4502", "protein_coding_gene_count": "4402", "non_coding_gene_count": "75", "pubmed_id": "20185262" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-07-06", "dateModified": "2018-07-06", "datePublished": "2018-07-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium lathyri" ], "sample_taxid": [ "395933" ], "sample_host_organism": [ "Lathyrus japonicus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Chungnam Province" ], "sample_host_location_id": [], "data_size": "1.366 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4857652", "Number of Sequences": "56", "Longest Sequences (bp)": "466241", "N50 (bp)": "305116", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.0", "Number of CDSs": "4348", "Average Protein Length": "321.9", "Coding Ratio (%)": "86.4", "Number of rRNAs": "3", "Number of tRNAs": "68", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium lathyri", "strain": "strain=KCTC 22544", "accession": "GCA_003290185.1", "taxid": 395933, "species_taxid": 395933, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1590, "total_fragments": 1593, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chryseobacterium lathyri", "strain": "strain=NBRC 105250", "accession": "GCA_007991435.1", "taxid": 395933, "species_taxid": 395933, "relation_to_type": "type", "validated": true, "ani": 99.9832, "matched_fragments": 1566, "total_fragments": 1593, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chryseobacterium elymi", "strain": "strain=KCTC 22547", "accession": "GCA_003385495.1", "taxid": 395936, "species_taxid": 395936, "relation_to_type": "type", "validated": true, "ani": 91.4314, "matched_fragments": 1236, "total_fragments": 1593, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium luteum", "strain": "strain=DSM 18605", "accession": "GCA_000737785.1", "taxid": 421531, "species_taxid": 421531, "relation_to_type": "type", "validated": true, "ani": 86.6352, "matched_fragments": 1097, "total_fragments": 1593, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium oranimense", "strain": "strain=DSM 19055", "accession": "GCA_900129755.1", "taxid": 421058, "species_taxid": 421058, "relation_to_type": "type", "validated": true, "ani": 85.9225, "matched_fragments": 1145, "total_fragments": 1593, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium antibioticum", "strain": "strain=RP-3-3", "accession": "GCA_012927325.1", "taxid": 2728847, "species_taxid": 2728847, "relation_to_type": "type", "validated": true, "ani": 85.8819, "matched_fragments": 1131, "total_fragments": 1593, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium oleae", "strain": "strain=DSM 25575", "accession": "GCA_900115055.1", "taxid": 491207, "species_taxid": 491207, "relation_to_type": "type", "validated": true, "ani": 85.4427, "matched_fragments": 1131, "total_fragments": 1593, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium shigense", "strain": "strain=DSM 17126", "accession": "GCA_002943655.1", "taxid": 297244, "species_taxid": 297244, "relation_to_type": "type", "validated": true, "ani": 84.8525, "matched_fragments": 1108, "total_fragments": 1593, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium shigense", "strain": "strain=DSM 17126", "accession": "GCA_900156575.1", "taxid": 297244, "species_taxid": 297244, "relation_to_type": "type", "validated": true, "ani": 84.8326, "matched_fragments": 1094, "total_fragments": 1593, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium endalhagicum", "strain": "strain=L7", "accession": "GCA_016745235.1", "taxid": 2797638, "species_taxid": 2797638, "relation_to_type": "type", "validated": true, "ani": 84.7637, "matched_fragments": 1113, "total_fragments": 1593, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium vrystaatense", "strain": "strain=LMG 22846", "accession": "GCA_000737765.1", "taxid": 307480, "species_taxid": 307480, "relation_to_type": "type", "validated": true, "ani": 84.5705, "matched_fragments": 1080, "total_fragments": 1593, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ginsenosidimutans", "strain": "strain=THG 15", "accession": "GCA_024807225.1", "taxid": 687846, "species_taxid": 687846, "relation_to_type": "type", "validated": true, "ani": 80.5466, "matched_fragments": 786, "total_fragments": 1593, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 80.2606, "matched_fragments": 705, "total_fragments": 1593, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium schmidteae", "strain": "strain=Marseille-P9602", "accession": "GCA_903166575.1", "taxid": 2730404, "species_taxid": 2730404, "relation_to_type": "type", "validated": true, "ani": 79.3586, "matched_fragments": 578, "total_fragments": 1593, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium fistulae", "strain": "strain=CECT 9393", "accession": "GCA_902729325.1", "taxid": 2675058, "species_taxid": 2675058, "relation_to_type": "type", "validated": true, "ani": 79.299, "matched_fragments": 464, "total_fragments": 1593, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003290185.1", "gtdb_species": "s__Chryseobacterium lathyri", "ani": 100.0, "matched_fragments": 1590, "total_fragments": 1593, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_003385495.1", "gtdb_species": "s__Chryseobacterium elymi", "ani": 91.4018, "matched_fragments": 1238, "total_fragments": 1593, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000737785.1", "gtdb_species": "s__Chryseobacterium luteum", "ani": 86.624, "matched_fragments": 1098, "total_fragments": 1593, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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"mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_012927325.1", "gtdb_species": "s__Chryseobacterium antibioticum", "ani": 85.8819, "matched_fragments": 1131, "total_fragments": 1593, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000737715.1", "gtdb_species": "s__Chryseobacterium sp000737715", "ani": 85.5208, "matched_fragments": 1094, "total_fragments": 1593, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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