{ "type": "genome", "identifier": "GCF_003293845.1", "organism": "Flavobacterium tibetense", "title": "Flavobacterium tibetense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003293845.1", "bioproject": "PRJNA224116", "biosample": "SAMN09459912", "wgs_master": "QLST00000000.1", "refseq_category": "reference genome", "taxid": "2233533", "species_taxid": "2233533", "organism_name": "Flavobacterium tibetense", "infraspecific_name": "strain=YH5", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/07/09", "asm_name": "ASM329384v1", "asm_submitter": "Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_003293845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/293/845/GCF_003293845.1_ASM329384v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2737708", "genome_size_ungapped": "2737548", "gc_percent": "33.000000", "replicon_count": "0", "scaffold_count": "56", "contig_count": "56", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003293845.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2602", "protein_coding_gene_count": "2534", "non_coding_gene_count": "59", "pubmed_id": "30457510" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-07-09", "dateModified": "2018-07-09", "datePublished": "2018-07-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium tibetense" ], "sample_taxid": [ "2233533" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Tibetan Plateau" ], "sample_host_location_id": [], "data_size": "0.757 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2737708", "Number of Sequences": "56", "Longest Sequences (bp)": "352469", "N50 (bp)": "183456", "Gap Ratio (%)": "0.006027", "GCcontent (%)": "33.2", "Number of CDSs": "2486", "Average Protein Length": "323.6", "Coding Ratio (%)": "88.2", "Number of rRNAs": "8", "Number of tRNAs": "44", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium tibetense", "strain": "strain=YH5", "accession": "GCA_003293845.1", "taxid": 2233533, "species_taxid": 2233533, 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"ani": 81.8745, "matched_fragments": 519, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium proteolyticum", "strain": "strain=1Y8A", "accession": "GCA_015223105.1", "taxid": 2911683, "species_taxid": 2911683, "relation_to_type": "type", "validated": true, "ani": 81.8495, "matched_fragments": 516, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cheniae", "strain": "strain=DSM 22462", "accession": "GCA_004363695.1", "taxid": 295428, "species_taxid": 295428, "relation_to_type": "type", "validated": true, "ani": 81.7054, "matched_fragments": 529, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cyclinae", "strain": "strain=KSM-R2A25", "accession": "GCA_021172145.1", "taxid": 2895947, "species_taxid": 2895947, "relation_to_type": "type", "validated": true, "ani": 81.6496, "matched_fragments": 502, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium celericrescens", "strain": "strain=TWA-26", "accession": "GCA_011392075.1", "taxid": 2709780, "species_taxid": 2709780, "relation_to_type": "type", "validated": true, "ani": 81.3423, "matched_fragments": 454, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cucumis", "strain": "strain=DSM 18830", "accession": "GCA_900148835.1", "taxid": 416016, "species_taxid": 416016, "relation_to_type": "type", "validated": true, "ani": 81.2207, "matched_fragments": 477, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium channae", "strain": "strain=KSM-R2A30", "accession": "GCA_021172165.1", "taxid": 2897181, "species_taxid": 2897181, "relation_to_type": "type", "validated": true, "ani": 80.8165, "matched_fragments": 485, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sediminilitoris", "strain": "strain=YSM-43", "accession": "GCA_023008245.1", "taxid": 2024526, "species_taxid": 2024526, "relation_to_type": "type", "validated": true, "ani": 78.7353, "matched_fragments": 335, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium jejuense", "strain": "strain=EC11", "accession": "GCA_006491595.2", "taxid": 1544455, "species_taxid": 1544455, "relation_to_type": "type", "validated": true, "ani": 78.4831, "matched_fragments": 364, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium profundi", "strain": "strain=TP390", "accession": "GCA_006491645.1", "taxid": 1774945, "species_taxid": 1774945, "relation_to_type": "type", "validated": true, "ani": 78.3778, "matched_fragments": 367, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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