{ "type": "genome", "identifier": "GCF_003298775.1", "organism": "Rhodosalinus halophilus", "title": "Rhodosalinus halophilus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003298775.1", "bioproject": "PRJNA224116", "biosample": "SAMN09522150", "wgs_master": "QNTQ00000000.1", "refseq_category": "reference genome", "taxid": "2259333", "species_taxid": "2259333", "organism_name": "Rhodosalinus halophilus", "infraspecific_name": "strain=E84", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/07/09", "asm_name": "ASM329877v1", "asm_submitter": "Shandong University", "gbrs_paired_asm": "GCA_003298775.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/298/775/GCF_003298775.1_ASM329877v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3872454", "genome_size_ungapped": "3872454", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "81", "contig_count": "81", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003298775.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3843", "protein_coding_gene_count": "3747", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-07-09", "dateModified": "2018-07-09", "datePublished": "2018-07-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodosalinus halophilus" ], "sample_taxid": [ "2259333" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Weihai" ], "sample_host_location_id": [], "data_size": "1.047 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3872454", "Number of Sequences": "81", "Longest Sequences (bp)": "585126", "N50 (bp)": "303257", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.8", "Number of CDSs": "3753", "Average Protein Length": "311.5", "Coding Ratio (%)": "90.6", "Number of rRNAs": "2", "Number of tRNAs": "46", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseivivax isoporae", "strain": "strain=LMG 25204", "accession": "GCA_000521865.1", "taxid": 591206, "species_taxid": 591206, "relation_to_type": "type", "validated": true, "ani": 79.5573, "matched_fragments": 606, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limimaricola pyoseonensis", "strain": "strain=DSM 21424", "accession": "GCA_900102015.1", "taxid": 521013, "species_taxid": 521013, "relation_to_type": "type", "validated": true, "ani": 79.5052, "matched_fragments": 554, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivivax lentus", "strain": "strain=DSM 29430", "accession": "GCA_900156805.1", "taxid": 633194, "species_taxid": 633194, "relation_to_type": "type", "validated": true, "ani": 79.0903, "matched_fragments": 558, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivivax halodurans", "strain": "strain=JCM 10272", "accession": "GCA_000521785.1", "taxid": 93683, "species_taxid": 93683, "relation_to_type": "type", "validated": true, "ani": 78.9922, "matched_fragments": 512, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivivax marinus", "strain": "strain=DSM 27511", "accession": "GCA_900109705.1", "taxid": 1379903, "species_taxid": 1379903, "relation_to_type": "type", "validated": true, "ani": 78.9893, "matched_fragments": 511, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivivax jejudonensis", "strain": "strain=CECT 8625", "accession": "GCA_900172265.1", "taxid": 1529041, "species_taxid": 1529041, "relation_to_type": "type", "validated": true, "ani": 78.9656, "matched_fragments": 557, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger thiooxidans", "strain": "strain=DSM 10146", "accession": "GCA_900102075.1", "taxid": 282683, "species_taxid": 282683, "relation_to_type": "type", "validated": true, "ani": 78.9641, "matched_fragments": 583, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenxinia saemankumensis", "strain": "strain=DSM 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474, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 78.5655, "matched_fragments": 491, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius nitratireducens", "strain": "strain=TFZ", "accession": "GCA_002925845.1", "taxid": 2044597, "species_taxid": 2044597, "relation_to_type": "type", "validated": true, "ani": 78.5399, "matched_fragments": 493, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=DSM 26383", "accession": "GCA_008728195.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 78.3386, "matched_fragments": 528, "total_fragments": 1267, "ani_threshold": 95, "status": 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"strain": "strain=MOLA 401", "accession": "GCA_000743715.1", "taxid": 1530186, "species_taxid": 1530186, "relation_to_type": "type", "validated": true, "ani": 78.0947, "matched_fragments": 397, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubellimicrobium mesophilum", "strain": "strain=DSM 19309", "accession": "GCA_000600335.2", "taxid": 1123067, "species_taxid": 1123067, "relation_to_type": "type", "validated": true, "ani": 78.0469, "matched_fragments": 416, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dinoroseobacter shibae", "strain": "strain=DFL 12", "accession": "GCA_000018145.1", "taxid": 215813, "species_taxid": 215813, "relation_to_type": "type", "validated": true, "ani": 77.9426, "matched_fragments": 399, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mangrovicoccus algicola", "strain": "strain=HB182678", "accession": "GCA_014903745.1", "taxid": 2771008, "species_taxid": 2771008, "relation_to_type": "type", "validated": true, "ani": 77.886, "matched_fragments": 403, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amaricoccus solimangrovi", "strain": "strain=HB172011", "accession": "GCA_006385685.1", "taxid": 2589815, "species_taxid": 2589815, "relation_to_type": "type", "validated": true, "ani": 77.8666, "matched_fragments": 430, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": "GCA_000590925.1", "taxid": 159346, "species_taxid": 159346, "relation_to_type": "type", "validated": true, "ani": 77.6488, "matched_fragments": 414, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": 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