{
    "type": "genome",
    "identifier": "GCF_003307275.1",
    "organism": "Lactobacillus paragasseri",
    "title": "Lactobacillus paragasseri",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institure of Genetics",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003307275.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00099061",
        "wgs_master": "BEXH00000000.1",
        "refseq_category": "na",
        "taxid": "2107999",
        "species_taxid": "2107999",
        "organism_name": "Lactobacillus paragasseri",
        "infraspecific_name": "strain=JCM 5343",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/06/21",
        "asm_name": "ASM330727v1",
        "asm_submitter": "National Institure of Genetics",
        "gbrs_paired_asm": "GCA_003307275.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/307/275/GCF_003307275.1_ASM330727v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1914502",
        "genome_size_ungapped": "1914502",
        "gc_percent": "34.500000",
        "replicon_count": "0",
        "scaffold_count": "16",
        "contig_count": "16",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003307275.1-RS_2024_08_20",
        "annotation_date": "2024-08-20",
        "total_gene_count": "1853",
        "protein_coding_gene_count": "1752",
        "non_coding_gene_count": "60",
        "pubmed_id": "30226464"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-06-21",
    "dateModified": "2018-06-21",
    "datePublished": "2018-06-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lactobacillus paragasseri"
        ],
        "sample_taxid": [
            "2107999"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "0.535 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1914502",
        "Number of Sequences": "16",
        "Longest Sequences (bp)": "667074",
        "N50 (bp)": "448741",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "34.7",
        "Number of CDSs": "1824",
        "Average Protein Length": "316.8",
        "Coding Ratio (%)": "90.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Lactobacillus paragasseri",
                "strain": "strain=JCM 5343",
                "accession": "GCA_003307275.1",
                "taxid": 2107999,
                "species_taxid": 2107999,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 629,
                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactobacillus paragasseri",
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                "accession": "GCA_003584685.1",
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                "species_taxid": 2107999,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9996,
                "matched_fragments": 627,
                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactobacillus gasseri",
                "strain": "strain=ATCC 33323",
                "accession": "GCA_008868295.1",
                "taxid": 1596,
                "species_taxid": 1596,
                "relation_to_type": "type",
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                "ani": 93.7181,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus gasseri",
                "strain": "strain=ATCC 33323",
                "accession": "GCA_000014425.1",
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                "species_taxid": 1596,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.6335,
                "matched_fragments": 561,
                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus gasseri",
                "strain": "strain=NCTC13722",
                "accession": "GCA_900452355.1",
                "taxid": 1596,
                "species_taxid": 1596,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.5993,
                "matched_fragments": 565,
                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus rodentium",
                "strain": "strain=DSM 24759",
                "accession": "GCA_024622425.1",
                "taxid": 947835,
                "species_taxid": 947835,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4536,
                "matched_fragments": 171,
                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003584685.1",
                "gtdb_species": "s__Lactobacillus paragasseri",
                "ani": 99.9996,
                "matched_fragments": 627,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.70",
                "min_intra_species_ani": "97.96",
                "mean_intra_species_af": "0.91",
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                "num_clustered_genomes": 40,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000014425.1",
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                "matched_fragments": 561,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.12",
                "min_intra_species_ani": "96.79",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 41,
                "status": "-"
            },
            {
                "accession": "GCF_001436695.1",
                "gtdb_species": "s__Lactobacillus taiwanensis",
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                "total_fragments": 629,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.80",
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                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 31,
                "status": "-"
            },
            {
                "accession": "GCF_000159355.1",
                "gtdb_species": "s__Lactobacillus johnsonii",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.89",
                "min_intra_species_ani": "95.28",
                "mean_intra_species_af": "0.86",
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                "num_clustered_genomes": 61,
                "status": "-"
            },
            {
                "accession": "GCA_910589175.1",
                "gtdb_species": "s__Lactobacillus sp910589175",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
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                "num_clustered_genomes": 7,
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            },
            {
                "accession": "GCF_001435325.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
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                "mean_intra_species_ani": "96.33",
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                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 9,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.148,
        "cell_length": 0.354,
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        "growth_tmp": 32.808,
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        "facultative_respiration": 0.155,
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        "mesophilic_range_tmp": 0.977,
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        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.983,
        "coccus_cell_shape": 0.0,
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        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Lactobacillus",
        "paragasseri"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}