{ "type": "genome", "identifier": "GCF_003311635.1", "organism": "Novacetimonas cocois", "title": "Novacetimonas cocois", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hainan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003311635.1", "bioproject": "PRJNA224116", "biosample": "SAMN08993285", "wgs_master": "QEXL00000000.1", "refseq_category": "reference genome", "taxid": "1747507", "species_taxid": "1747507", "organism_name": "Novacetimonas cocois", "infraspecific_name": "strain=WE7", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/07/10", "asm_name": "ASM331163v1", "asm_submitter": "Hainan University", "gbrs_paired_asm": "GCA_003311635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/311/635/GCF_003311635.1_ASM331163v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3406946", "genome_size_ungapped": "3405809", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "75", "contig_count": "75", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003311635.1-RS_2024_12_15", "annotation_date": "2024-12-15", "total_gene_count": "3134", "protein_coding_gene_count": "2995", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-07-10", "dateModified": "2018-07-10", "datePublished": "2018-07-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Novacetimonas cocois" ], "sample_taxid": [ "1747507" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Haikou" ], "sample_host_location_id": [], "data_size": "0.948 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3406946", "Number of Sequences": "75", "Longest Sequences (bp)": "360397", "N50 (bp)": "168149", "Gap Ratio (%)": "0.038069", "GCcontent (%)": "62.3", "Number of CDSs": "3060", "Average Protein Length": "317.8", "Coding Ratio (%)": "85.6", "Number of rRNAs": "3", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Novacetimonas cocois", "strain": "strain=WE7", "accession": "GCA_003311635.1", "taxid": 1747507, "species_taxid": 1747507, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1096, "total_fragments": 1099, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Novacetimonas pomaceti", "strain": "strain=T5K1", "accession": "GCA_003207955.1", "taxid": 2021998, "species_taxid": 2021998, "relation_to_type": "type", "validated": true, "ani": 95.2298, "matched_fragments": 967, "total_fragments": 1099, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Novacetimonas maltaceti", "strain": "strain=LMG 1529", "accession": "GCA_002906255.1", "taxid": 1203393, "species_taxid": 1203393, "relation_to_type": "type", "validated": true, "ani": 86.4403, "matched_fragments": 822, "total_fragments": 1099, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novacetimonas maltaceti", "strain": "strain=LMG 1529", "accession": "GCA_003206475.1", "taxid": 1203393, "species_taxid": 1203393, "relation_to_type": "type", "validated": true, "ani": 86.4048, "matched_fragments": 863, "total_fragments": 1099, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novacetimonas hansenii", "strain": "strain=JCM 7643", "accession": "GCA_000964405.1", "taxid": 436, "species_taxid": 436, "relation_to_type": "type", "validated": true, "ani": 84.4159, "matched_fragments": 677, "total_fragments": 1099, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter liquefaciens", "strain": "strain=LMG 1382", "accession": "GCA_014174285.1", "taxid": 89584, "species_taxid": 89584, "relation_to_type": "type", "validated": true, "ani": 79.0366, "matched_fragments": 399, "total_fragments": 1099, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter garciniae", "strain": "strain=TBRC 12339", "accession": "GCA_017377735.1", "taxid": 2817435, "species_taxid": 2817435, "relation_to_type": "type", "validated": true, "ani": 78.2529, "matched_fragments": 277, "total_fragments": 1099, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stappia albiluteola", "strain": "strain=F7233", "accession": "GCA_014050225.1", "taxid": 2758565, "species_taxid": 2758565, "relation_to_type": "type", "validated": true, "ani": 76.1457, "matched_fragments": 57, "total_fragments": 1099, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium umbonatum", "strain": "strain=FSY-9", "accession": "GCA_004005905.1", "taxid": 1908524, "species_taxid": 1908524, "relation_to_type": "type", "validated": true, "ani": 75.8706, "matched_fragments": 51, "total_fragments": 1099, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas hankookensis", "strain": "strain=KCTC 22579", "accession": "GCA_022664465.1", "taxid": 563996, "species_taxid": 563996, "relation_to_type": "type", "validated": true, "ani": 75.6038, "matched_fragments": 72, "total_fragments": 1099, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003311635.1", "gtdb_species": "s__Komagataeibacter cocois", "ani": 100.0, "matched_fragments": 1096, "total_fragments": 1099, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Komagataeibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.20", "min_intra_species_ani": "95.16", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_002906255.1", "gtdb_species": "s__Komagataeibacter maltaceti", "ani": 86.4351, "matched_fragments": 823, "total_fragments": 1099, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Komagataeibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003206495.1", "gtdb_species": "s__Komagataeibacter entanii", "ani": 86.324, "matched_fragments": 835, "total_fragments": 1099, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Komagataeibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.26", "min_intra_species_ani": "98.23", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000964405.1", "gtdb_species": "s__Komagataeibacter hansenii", "ani": 84.405, "matched_fragments": 678, "total_fragments": 1099, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Komagataeibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.02", "min_intra_species_ani": "97.76", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.75", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCF_003207895.1", "gtdb_species": "s__Komagataeibacter swingsii", "ani": 81.8223, "matched_fragments": 616, "total_fragments": 1099, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Komagataeibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.10", "min_intra_species_ani": "95.69", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.84", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_003403295.1", "gtdb_species": "s__Komagataeibacter melaceti", "ani": 81.605, "matched_fragments": 574, "total_fragments": 1099, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Komagataeibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003207855.1", "gtdb_species": "s__Komagataeibacter rhaeticus", "ani": 80.7047, "matched_fragments": 556, "total_fragments": 1099, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Komagataeibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.08", "min_intra_species_ani": "98.72", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_014174275.1", "gtdb_species": "s__Gluconacetobacter takamatsuzukensis", "ani": 79.2382, "matched_fragments": 447, "total_fragments": 1099, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconacetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014174215.1", "gtdb_species": "s__Gluconacetobacter tumulicola", "ani": 79.2098, "matched_fragments": 418, "total_fragments": 1099, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconacetobacter", "ani_circumscription_radius": 96.2181, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Novacetimonas", "cocois" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }