{ "type": "genome", "identifier": "GCF_003312425.1", "organism": "Flavobacterium psychrolimnae", "title": "Flavobacterium psychrolimnae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Konggi University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003312425.1", "bioproject": "PRJNA224116", "biosample": "SAMN09536670", "wgs_master": "QNUX00000000.1", "refseq_category": "reference genome", "taxid": "249351", "species_taxid": "249351", "organism_name": "Flavobacterium psychrolimnae", "infraspecific_name": "strain=LMG 22018", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/07/10", "asm_name": "ASM331242v1", "asm_submitter": "Konggi University", "gbrs_paired_asm": "GCA_003312425.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/312/425/GCF_003312425.1_ASM331242v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3652041", "genome_size_ungapped": "3652041", "gc_percent": "34.000000", "replicon_count": "0", "scaffold_count": "23", "contig_count": "23", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003312425.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3240", "protein_coding_gene_count": "3175", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-07-10", "dateModified": "2018-07-10", "datePublished": "2018-07-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium psychrolimnae" ], "sample_taxid": [ "249351" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Suwon" ], "sample_host_location_id": [], "data_size": "1.020 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3652041", "Number of Sequences": "23", "Longest Sequences (bp)": "499823", "N50 (bp)": "227682", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.2", "Number of CDSs": "3158", "Average Protein Length": "336.4", "Coding Ratio (%)": "87.3", "Number of rRNAs": "1", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium psychrolimnae", "strain": "strain=LMG 22018", "accession": "GCA_003312425.1", "taxid": 249351, "species_taxid": 249351, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1203, "total_fragments": 1206, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium petrolei", "strain": "strain=Kopri-42", "accession": "GCA_003314435.2", "taxid": 2259594, "species_taxid": 2259594, "relation_to_type": "type", "validated": true, "ani": 92.726, "matched_fragments": 968, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium limicola", "strain": "strain=DSM 15094", "accession": "GCA_003634755.1", "taxid": 180441, "species_taxid": 180441, "relation_to_type": "type", "validated": true, "ani": 90.4635, "matched_fragments": 835, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sinopsychrotolerans", "strain": "strain=CGMCC 1.8704", "accession": "GCA_900110375.1", "taxid": 604089, "species_taxid": 604089, "relation_to_type": "type", "validated": true, "ani": 89.5897, "matched_fragments": 871, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium caseinilyticum", "strain": "strain=AT-3-2", "accession": "GCA_004349085.1", "taxid": 2541732, "species_taxid": 2541732, "relation_to_type": "type", "validated": true, "ani": 87.7366, "matched_fragments": 868, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium xueshanense", "strain": "strain=CGMCC 1.9227", "accession": "GCA_900112975.1", "taxid": 935223, "species_taxid": 935223, "relation_to_type": "type", "validated": true, "ani": 87.0772, "matched_fragments": 881, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sandaracinum", "strain": "strain=LB-D12", "accession": "GCA_004349135.1", "taxid": 2541733, "species_taxid": 2541733, "relation_to_type": "type", "validated": true, "ani": 86.5944, "matched_fragments": 894, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium glaciei", "strain": "strain=CGMCC 1.5380", "accession": "GCA_007994155.1", "taxid": 386300, "species_taxid": 386300, "relation_to_type": "type", "validated": true, "ani": 86.4598, "matched_fragments": 785, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium glaciei", "strain": "strain=DSM 19728", "accession": "GCA_003350545.1", "taxid": 386300, "species_taxid": 386300, "relation_to_type": "type", "validated": true, "ani": 86.4178, "matched_fragments": 790, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium rhamnosiphilum", "strain": "strain=LB3P52", "accession": "GCA_004349195.1", "taxid": 2541724, "species_taxid": 2541724, "relation_to_type": "type", "validated": true, "ani": 85.6336, "matched_fragments": 797, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium ranwuense", "strain": "strain=LB2P22", "accession": "GCA_004349315.1", "taxid": 2541725, "species_taxid": 2541725, "relation_to_type": "type", "validated": true, "ani": 85.4588, "matched_fragments": 812, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium xinjiangense", "strain": "strain=CGMCC 1.2749", "accession": "GCA_900142885.1", "taxid": 178356, "species_taxid": 178356, "relation_to_type": "type", "validated": true, "ani": 82.5094, "matched_fragments": 739, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium taihuense", "strain": "strain=NAS39", "accession": "GCA_019351435.1", "taxid": 2857508, "species_taxid": 2857508, "relation_to_type": "type", "validated": true, "ani": 79.3665, "matched_fragments": 493, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 78.5542, "matched_fragments": 421, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 78.412, "matched_fragments": 409, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium branchiophilum", "strain": "strain=DSM 24789", "accession": "GCA_006716585.1", "taxid": 55197, "species_taxid": 55197, "relation_to_type": "type", "validated": true, "ani": 77.2641, "matched_fragments": 186, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium amniphilum", "strain": "strain=KYPY10", "accession": "GCA_023634845.1", "taxid": 1834035, "species_taxid": 1834035, "relation_to_type": "type", "validated": true, "ani": 76.7409, "matched_fragments": 144, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003312425.1", "gtdb_species": "s__Flavobacterium psychrolimnae", "ani": 100.0, "matched_fragments": 1203, "total_fragments": 1206, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_015752255.1", "gtdb_species": "s__Flavobacterium sp015752255", "ani": 94.6143, "matched_fragments": 1036, "total_fragments": 1206, "gtdb_taxonomy": 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