{ "type": "genome", "identifier": "GCF_003312875.1", "organism": "Amycolatopsis albispora", "title": "Amycolatopsis albispora", "description": "na", "data type": "Genome sequencing and assembly", "organization": "College of Pharmaceutical Science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003312875.1", "bioproject": "PRJNA224116", "biosample": "SAMN04604227", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1804986", "species_taxid": "1804986", "organism_name": "Amycolatopsis albispora", "infraspecific_name": "strain=WP1", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/07/11", "asm_name": "ASM331287v1", "asm_submitter": "College of Pharmaceutical Science", "gbrs_paired_asm": "GCA_003312875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/312/875/GCF_003312875.1_ASM331287v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9121443", "genome_size_ungapped": "9121443", "gc_percent": "70.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-05", "total_gene_count": "8537", "protein_coding_gene_count": "8394", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-07-11", "dateModified": "2018-07-11", "datePublished": "2018-07-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Amycolatopsis albispora" ], "sample_taxid": [ "1804986" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "2.425 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.78, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9121443", "Number of Sequences": "1", "Longest Sequences (bp)": "9121443", "N50 (bp)": "9121443", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.7", "Number of CDSs": "8567", "Average Protein Length": "327.0", "Coding Ratio (%)": "92.1", "Number of rRNAs": "12", "Number of tRNAs": "62", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Amycolatopsis albispora", "strain": "strain=WP1", "accession": "GCA_003312875.1", "taxid": 1804986, "species_taxid": 1804986, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3040, "total_fragments": 3040, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Amycolatopsis magusensis", "strain": "strain=DSM 45510", "accession": "GCA_017875555.1", "taxid": 882444, "species_taxid": 882444, "relation_to_type": "type", "validated": true, "ani": 88.9336, "matched_fragments": 2319, "total_fragments": 3040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis suaedae", "strain": "strain=8-3EHSu", "accession": "GCA_004214935.1", "taxid": 2510978, "species_taxid": 2510978, "relation_to_type": "type", "validated": true, "ani": 81.4191, "matched_fragments": 1517, "total_fragments": 3040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis nigrescens", "strain": "strain=CSC17Ta-90", "accession": "GCA_000384315.1", "taxid": 381445, "species_taxid": 381445, "relation_to_type": "type", "validated": true, "ani": 81.1967, "matched_fragments": 1522, "total_fragments": 3040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis anabasis", "strain": "strain=EGI 650086", "accession": "GCA_009765355.1", "taxid": 1840409, "species_taxid": 1840409, "relation_to_type": "type", "validated": true, "ani": 80.7449, "matched_fragments": 1517, "total_fragments": 3040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis thermalba", "strain": "strain=NRRL B-24845", "accession": "GCA_003385215.1", "taxid": 944492, "species_taxid": 944492, "relation_to_type": "type", "validated": true, "ani": 80.5829, "matched_fragments": 1289, "total_fragments": 3040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis methanolica", "strain": "strain=239", "accession": "GCA_000371885.1", "taxid": 1814, "species_taxid": 1814, "relation_to_type": "type", "validated": true, "ani": 80.5147, "matched_fragments": 1261, "total_fragments": 3040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis methanolica", "strain": "strain=239", "accession": "GCA_000739085.1", "taxid": 1814, "species_taxid": 1814, "relation_to_type": "type", "validated": true, "ani": 80.5128, "matched_fragments": 1250, "total_fragments": 3040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis saalfeldensis", "strain": "strain=DSM 44993", "accession": "GCA_900110575.1", "taxid": 394193, "species_taxid": 394193, "relation_to_type": "type", "validated": true, "ani": 80.3363, "matched_fragments": 1422, "total_fragments": 3040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis eburnea", "strain": "strain=GLM-1", "accession": "GCA_003937945.1", "taxid": 2267691, "species_taxid": 2267691, "relation_to_type": "type", "validated": true, "ani": 80.2985, "matched_fragments": 1558, "total_fragments": 3040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis acididurans", "strain": "strain=K13G38", "accession": "GCA_012328925.1", "taxid": 2724524, "species_taxid": 2724524, "relation_to_type": "type", "validated": true, "ani": 80.2934, "matched_fragments": 1155, "total_fragments": 3040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis aidingensis", "strain": "strain=YIM 96748", "accession": "GCA_018885265.1", "taxid": 2842453, "species_taxid": 2842453, "relation_to_type": "type", "validated": true, "ani": 80.2272, "matched_fragments": 1259, "total_fragments": 3040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis sulphurea", "strain": "strain=DSM 46092", "accession": "GCA_002564045.1", "taxid": 76022, "species_taxid": 76022, "relation_to_type": "type", "validated": true, "ani": 80.1985, "matched_fragments": 1047, "total_fragments": 3040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis pretoriensis", "strain": "strain=DSM 44654", "accession": "GCA_900107925.1", "taxid": 218821, "species_taxid": 218821, "relation_to_type": "type", "validated": true, "ani": 80.1936, "matched_fragments": 1466, "total_fragments": 3040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis pittospori", "strain": "strain=PIP199", "accession": "GCA_013870525.1", "taxid": 2749434, "species_taxid": 2749434, "relation_to_type": "type", "validated": true, "ani": 80.1925, "matched_fragments": 1318, "total_fragments": 3040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis tolypomycina", "strain": "strain=DSM 44544", "accession": "GCA_900105945.1", "taxid": 208445, "species_taxid": 208445, "relation_to_type": "type", "validated": true, "ani": 80.1783, "matched_fragments": 1481, "total_fragments": 3040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis japonica", "strain": "strain=MG417-CF17", "accession": "GCA_000732925.1", "taxid": 208439, "species_taxid": 208439, "relation_to_type": "type", "validated": true, "ani": 80.1231, "matched_fragments": 1422, "total_fragments": 3040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis camponoti", "strain": "strain=A23", "accession": "GCA_902497555.1", "taxid": 2606593, "species_taxid": 2606593, "relation_to_type": "type", "validated": true, "ani": 79.9443, "matched_fragments": 1514, "total_fragments": 3040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella cavernicola", "strain": "strain=ASG 168", "accession": "GCA_016595675.1", "taxid": 2800127, "species_taxid": 2800127, "relation_to_type": "type", "validated": true, "ani": 79.8038, "matched_fragments": 1178, "total_fragments": 3040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora globicatena", "strain": "strain=DSM 44256", "accession": "GCA_024171945.1", "taxid": 103729, "species_taxid": 103729, "relation_to_type": "type", "validated": true, 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017309385.1", "gtdb_species": "s__Amycolatopsis sp017309385", "ani": 90.5547, "matched_fragments": 2481, "total_fragments": 3040, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Amycolatopsis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017875555.1", "gtdb_species": "s__Amycolatopsis magusensis", "ani": 88.9352, "matched_fragments": 2319, "total_fragments": 3040, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Amycolatopsis", "ani_circumscription_radius": 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