{ "type": "genome", "identifier": "GCF_003312915.1", "organism": "Flavobacterium fluviale", "title": "Flavobacterium fluviale", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003312915.1", "bioproject": "PRJNA224116", "biosample": "SAMN09487226", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2249356", "species_taxid": "2249356", "organism_name": "Flavobacterium fluviale", "infraspecific_name": "strain=HYN0086", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/07/11", "asm_name": "ASM331291v1", "asm_submitter": "Korea University", "gbrs_paired_asm": "GCA_003312915.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/312/915/GCF_003312915.1_ASM331291v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4839571", "genome_size_ungapped": "4839571", "gc_percent": "34.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003312915.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4177", "protein_coding_gene_count": "4082", "non_coding_gene_count": "83", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-07-11", "dateModified": "2018-07-11", "datePublished": "2018-07-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium fluviale" ], "sample_taxid": [ "2249356" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.341 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4839571", "Number of Sequences": "1", "Longest Sequences (bp)": "4839571", "N50 (bp)": "4839571", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.9", "Number of CDSs": "4079", "Average Protein Length": "343.9", "Coding Ratio (%)": "87.0", "Number of rRNAs": "18", "Number of tRNAs": "62", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium fluviale", "strain": "strain=HYN0086", "accession": "GCA_003312915.1", "taxid": 2249356, "species_taxid": 2249356, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1611, "total_fragments": 1613, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium ginsenosidimutans", "strain": "strain=THG 01", "accession": "GCA_003254625.1", "taxid": 687844, "species_taxid": 687844, "relation_to_type": "type", "validated": true, "ani": 85.5239, "matched_fragments": 1225, "total_fragments": 1613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium chungbukense", "strain": "strain=CS100", "accession": "GCA_020805785.1", "taxid": 877464, "species_taxid": 877464, "relation_to_type": "type", "validated": true, "ani": 85.471, "matched_fragments": 1251, "total_fragments": 1613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 85.3635, "matched_fragments": 1229, "total_fragments": 1613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium quisquiliarum", "strain": "strain=EA-12", "accession": "GCA_019308285.1", "taxid": 1834436, "species_taxid": 1834436, "relation_to_type": "type", "validated": true, "ani": 85.1715, "matched_fragments": 1237, "total_fragments": 1613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 85.149, "matched_fragments": 1208, "total_fragments": 1613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sharifuzzamanii", "strain": "strain=A7.6", "accession": "GCA_003254585.1", "taxid": 2211133, "species_taxid": 2211133, "relation_to_type": "type", "validated": true, "ani": 85.0669, "matched_fragments": 1167, "total_fragments": 1613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium johnsoniae", "strain": "strain=UW101; ATCC 17061", "accession": "GCA_000016645.1", "taxid": 986, "species_taxid": 986, "relation_to_type": "type", "validated": true, "ani": 83.943, "matched_fragments": 1170, "total_fragments": 1613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 83.9284, "matched_fragments": 1047, "total_fragments": 1613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium johnsoniae", "strain": "strain=DSM 2064", "accession": "GCA_900142355.1", "taxid": 986, "species_taxid": 986, "relation_to_type": "type", "validated": true, "ani": 83.8837, "matched_fragments": 1148, "total_fragments": 1613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium johnsoniae", "strain": "strain=ATCC 17061", "accession": "GCA_002221975.1", "taxid": 986, "species_taxid": 986, "relation_to_type": "type", "validated": true, "ani": 83.8296, "matched_fragments": 1148, "total_fragments": 1613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium plurextorum", "strain": "strain=CCUG 60112", "accession": "GCA_002217395.1", "taxid": 1114867, "species_taxid": 1114867, "relation_to_type": "type", "validated": true, "ani": 83.3794, "matched_fragments": 983, "total_fragments": 1613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 83.2248, "matched_fragments": 1107, "total_fragments": 1613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium foetidum", "strain": "strain=JCM 32085", "accession": "GCA_004634245.1", "taxid": 2026681, "species_taxid": 2026681, "relation_to_type": "type", "validated": true, "ani": 82.9493, "matched_fragments": 1057, "total_fragments": 1613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium chilense", "strain": "strain=LMG 26360", "accession": "GCA_001602525.1", "taxid": 946677, "species_taxid": 946677, "relation_to_type": "type", "validated": true, "ani": 82.7472, "matched_fragments": 1018, "total_fragments": 1613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium chilense", "strain": "strain=DSM 24724", "accession": "GCA_900142685.1", "taxid": 946677, "species_taxid": 946677, "relation_to_type": "type", "validated": true, "ani": 82.6458, "matched_fragments": 1036, "total_fragments": 1613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium oreochromis", "strain": "strain=Costa Rica 04-02-TN", "accession": "GCA_019565455.1", "taxid": 2906078, "species_taxid": 2906078, "relation_to_type": "type", "validated": true, "ani": 77.7612, "matched_fragments": 167, "total_fragments": 1613, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003312915.1", "gtdb_species": "s__Flavobacterium sp003312915", "ani": 100.0, "matched_fragments": 1611, "total_fragments": 1613, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_001429295.1", "gtdb_species": "s__Flavobacterium sp001429295", "ani": 91.0858, "matched_fragments": 1278, "total_fragments": 1613, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.90", "min_intra_species_ani": "97.90", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002304005.1", "gtdb_species": "s__Flavobacterium sp002304005", "ani": 88.1472, "matched_fragments": 1303, "total_fragments": 1613, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013388355.1", "gtdb_species": "s__Flavobacterium sp013388355", "ani": 85.5587, "matched_fragments": 882, "total_fragments": 1613, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003254625.1", "gtdb_species": "s__Flavobacterium ginsenosidimutans", "ani": 85.5327, "matched_fragments": 1224, "total_fragments": 1613, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002303885.1", "gtdb_species": "s__Flavobacterium sp002303885", "ani": 85.3638, "matched_fragments": 1244, "total_fragments": 1613, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013393195.1", "gtdb_species": "s__Flavobacterium collinsii_A", "ani": 85.217, "matched_fragments": 1247, "total_fragments": 1613, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003254585.1", "gtdb_species": "s__Flavobacterium sharifuzzamanii", "ani": 85.0667, "matched_fragments": 1168, "total_fragments": 1613, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016405855.1", "gtdb_species": "s__Flavobacterium sp002399805", "ani": 84.8975, "matched_fragments": 1193, "total_fragments": 1613, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.61", "min_intra_species_ani": "96.61", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_017744675.1", "gtdb_species": "s__Flavobacterium sp017744675", "ani": 84.6132, "matched_fragments": 1168, "total_fragments": 1613, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001879205.1", "gtdb_species": "s__Flavobacterium johnsoniae_A", "ani": 84.1731, "matched_fragments": 1138, "total_fragments": 1613, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000016645.1", "gtdb_species": "s__Flavobacterium johnsoniae", "ani": 83.9607, "matched_fragments": 1167, "total_fragments": 1613, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.23", "min_intra_species_ani": "96.72", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.86", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_002482975.1", "gtdb_species": "s__Flavobacterium sp002482975", "ani": 83.7209, "matched_fragments": 1091, "total_fragments": 1613, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000745775.1", "gtdb_species": "s__Flavobacterium sp000745775", "ani": 83.3943, "matched_fragments": 1024, "total_fragments": 1613, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004119495.1", "gtdb_species": "s__Flavobacterium sp004119495", "ani": 83.3376, "matched_fragments": 977, "total_fragments": 1613, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009711135.1", "gtdb_species": "s__Flavobacterium sp009711135", "ani": 83.231, "matched_fragments": 1028, "total_fragments": 1613, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004368785.1", "gtdb_species": "s__Flavobacterium sp004368785", "ani": 82.5112, "matched_fragments": 1067, "total_fragments": 1613, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.326, "cell_length": 0.278, "doubling_h": 1.271, "growth_tmp": 24.705, "optimum_tmp": 25.047, "optimum_ph": 7.141, "genome_size": 3988255.815, "gc_content": 34.893, "coding_genes": 3154.048, "rRNA16S_genes": 5.145, "tRNA_genes": 58.611, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.347, "range_salinity": 0.333, "facultative_respiration": 0.049, "anaerobic_respiration": 0.019, "aerobic_respiration": 0.931, "mesophilic_range_tmp": 0.789, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.21, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "fluviale" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }