{ "type": "genome", "identifier": "GCF_003313395.1", "organism": "Nonomuraea lactucae", "title": "Nonomuraea lactucae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "School of life science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003313395.1", "bioproject": "PRJNA224116", "biosample": "SAMN09498857", "wgs_master": "QNFZ00000000.1", "refseq_category": "reference genome", "taxid": "2249762", "species_taxid": "2249762", "organism_name": "Nonomuraea lactucae", "infraspecific_name": "strain=NEAU-YG30", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/07/11", "asm_name": "ASM331339v1", "asm_submitter": "School of life science", "gbrs_paired_asm": "GCA_003313395.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/313/395/GCF_003313395.1_ASM331339v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8673472", "genome_size_ungapped": "8673472", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "1069", "contig_count": "1069", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003313395.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "8838", "protein_coding_gene_count": "8303", "non_coding_gene_count": "76", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-07-11", "dateModified": "2018-07-11", "datePublished": "2018-07-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Nonomuraea lactucae" ], "sample_taxid": [ "2249762" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Harbin" ], "sample_host_location_id": [], "data_size": "2.355 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 7.99, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8673472", "Number of Sequences": "1069", "Longest Sequences (bp)": "82026", "N50 (bp)": "15788", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.9", "Number of CDSs": "7476", "Average Protein Length": "293.4", "Coding Ratio (%)": "75.9", "Number of rRNAs": "2", "Number of tRNAs": "86", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nonomuraea lactucae", "strain": "strain=NEAU-YG30", "accession": "GCA_003313395.1", "taxid": 2249762, "species_taxid": 2249762, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2324, "total_fragments": 2363, "ani_threshold": 95, 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"strain": "strain=CGMCC 4.7431", "accession": "GCA_019396405.1", "taxid": 2665663, "species_taxid": 2665663, "relation_to_type": "type", "validated": true, "ani": 84.1912, "matched_fragments": 969, "total_fragments": 2363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea aurantiaca", "strain": "strain=NEAU-L178", "accession": "GCA_020215705.1", "taxid": 2878562, "species_taxid": 2878562, "relation_to_type": "type", "validated": true, "ani": 83.7997, "matched_fragments": 1448, "total_fragments": 2363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea guangzhouensis", "strain": "strain=CGMCC 4.7101", "accession": "GCA_019396345.1", "taxid": 1291555, "species_taxid": 1291555, "relation_to_type": "type", "validated": true, "ani": 83.7492, "matched_fragments": 1504, "total_fragments": 2363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea phyllanthi", "strain": "strain=WYY166", "accession": 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83.0267, "matched_fragments": 1342, "total_fragments": 2363, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 7.99, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014207745.1", "gtdb_species": "s__Nonomuraea muscovyensis", "ani": 86.949, "matched_fragments": 1525, "total_fragments": 2363, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Nonomuraea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002850745.1", "gtdb_species": "s__Nonomuraea indica", "ani": 86.6569, "matched_fragments": 1457, "total_fragments": 2363, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Nonomuraea", 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95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013363975.1", "gtdb_species": "s__Nonomuraea montanisoli", "ani": 84.8283, "matched_fragments": 1451, "total_fragments": 2363, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Nonomuraea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018603905.1", "gtdb_species": "s__Nonomuraea sp018603905", "ani": 83.8305, "matched_fragments": 1445, "total_fragments": 2363, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Nonomuraea", "ani_circumscription_radius": 95.0, 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