{ "type": "genome", "identifier": "GCF_003315095.1", "organism": "Achromobacter marplatensis", "title": "Achromobacter marplatensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003315095.1", "bioproject": "PRJNA224116", "biosample": "SAMN09074963", "wgs_master": "QNRM00000000.1", "refseq_category": "na", "taxid": "470868", "species_taxid": "470868", "organism_name": "Achromobacter marplatensis", "infraspecific_name": "strain=CECT 7342", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/07/12", "asm_name": "ASM331509v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003315095.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/315/095/GCF_003315095.1_ASM331509v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6882391", "genome_size_ungapped": "6881409", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "43", "contig_count": "43", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003315095.1-RS_2024_03_19", "annotation_date": "2024-03-19", "total_gene_count": "6383", "protein_coding_gene_count": "6274", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-07-12", "dateModified": "2018-07-12", "datePublished": "2018-07-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Achromobacter marplatensis" ], "sample_taxid": [ "470868" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.899 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6882391", "Number of Sequences": "43", "Longest Sequences (bp)": "1469177", "N50 (bp)": "1018665", "Gap Ratio (%)": "0.014268", "GCcontent (%)": "65.1", "Number of CDSs": "6366", "Average Protein Length": "325.5", "Coding Ratio (%)": "90.3", "Number of rRNAs": "4", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Achromobacter marplatensis", "strain": "strain=CECT 7342", "accession": "GCA_003315095.1", "taxid": 470868, "species_taxid": 470868, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2271, "total_fragments": 2272, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Achromobacter marplatensis", "strain": "strain=B2", "accession": "GCA_002209535.1", "taxid": 470868, "species_taxid": 470868, "relation_to_type": "type", "validated": true, "ani": 99.9956, "matched_fragments": 2260, "total_fragments": 2272, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Achromobacter marplatensis", "strain": "strain=LMG 26219", "accession": "GCA_902859635.1", "taxid": 470868, "species_taxid": 470868, "relation_to_type": "type", "validated": true, "ani": 99.9943, "matched_fragments": 2254, "total_fragments": 2272, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Achromobacter pestifer", "strain": "strain=LMG 3431", "accession": "GCA_902859625.1", "taxid": 1353889, "species_taxid": 1353889, "relation_to_type": "type", "validated": true, "ani": 88.5713, "matched_fragments": 1793, "total_fragments": 2272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter kerstersii", "strain": "strain=LMG 3441", "accession": "GCA_902859595.1", "taxid": 1353890, "species_taxid": 1353890, "relation_to_type": "type", "validated": true, "ani": 87.7344, "matched_fragments": 1737, "total_fragments": 2272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter spanius", "strain": "strain=LMG 5911", "accession": "GCA_902859605.1", "taxid": 217203, "species_taxid": 217203, "relation_to_type": "suspected-type", "validated": true, "ani": 87.1983, "matched_fragments": 1596, "total_fragments": 2272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter piechaudii", "strain": "strain=LMG 1873", "accession": "GCA_902859685.1", "taxid": 72556, "species_taxid": 72556, "relation_to_type": "type", "validated": true, "ani": 86.7773, "matched_fragments": 1638, "total_fragments": 2272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter veterisilvae", "strain": "strain=LMG 30378", "accession": "GCA_900496975.1", "taxid": 2069367, "species_taxid": 2069367, "relation_to_type": "type", "validated": true, "ani": 86.6285, "matched_fragments": 1478, "total_fragments": 2272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter deleyi", "strain": "strain=LMG 3458", "accession": "GCA_902859705.1", "taxid": 1353891, "species_taxid": 1353891, "relation_to_type": "type", "validated": true, "ani": 86.044, "matched_fragments": 1600, "total_fragments": 2272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=PartM-Axylosoxidans-RM8376", "accession": "GCA_022870085.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 85.5563, "matched_fragments": 1590, "total_fragments": 2272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter insolitus", "strain": "strain=NCTC 13520", "accession": "GCA_024168865.1", "taxid": 217204, "species_taxid": 217204, "relation_to_type": "type", "validated": true, "ani": 85.3226, "matched_fragments": 1534, "total_fragments": 2272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella bronchiseptica", "strain": "strain=CCUG 219", "accession": "GCA_021391275.1", "taxid": 518, "species_taxid": 518, "relation_to_type": "suspected-type", "validated": true, "ani": 81.8458, "matched_fragments": 865, "total_fragments": 2272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eoetvoesia caeni", "strain": "strain=PB3-7B", "accession": "GCA_022688825.1", "taxid": 645616, "species_taxid": 645616, "relation_to_type": "type", "validated": true, "ani": 77.8296, "matched_fragments": 345, "total_fragments": 2272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia solanacearum", "strain": "strain=K60", "accession": "GCA_002251695.1", "taxid": 305, "species_taxid": 305, "relation_to_type": "type", "validated": true, "ani": 77.6839, "matched_fragments": 379, "total_fragments": 2272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum lusitanum", "strain": "strain=P6-12", "accession": "GCA_000256565.1", "taxid": 213312, "species_taxid": 213312, "relation_to_type": "type", "validated": true, "ani": 77.3849, "matched_fragments": 292, "total_fragments": 2272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella aquatica", "strain": "strain=FT127W", "accession": "GCA_009857595.1", "taxid": 2660641, "species_taxid": 2660641, "relation_to_type": "type", "validated": true, "ani": 77.2267, "matched_fragments": 430, "total_fragments": 2272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas yeongjuensis", "strain": "strain=DSM 18204", "accession": "GCA_010093345.1", "taxid": 377616, "species_taxid": 377616, "relation_to_type": "type", "validated": true, "ani": 75.8657, "matched_fragments": 149, "total_fragments": 2272, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002209535.1", "gtdb_species": "s__Achromobacter marplatensis", "ani": 99.9956, "matched_fragments": 2260, "total_fragments": 2272, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.15", "min_intra_species_ani": "97.44", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_012928505.1", "gtdb_species": "s__Achromobacter sp012928505", "ani": 91.7607, "matched_fragments": 1811, "total_fragments": 2272, "gtdb_taxonomy": 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