{ "type": "genome", "identifier": "GCF_003316875.1", "organism": "Aliidiomarina celeris", "title": "Aliidiomarina celeris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003316875.1", "bioproject": "PRJNA224116", "biosample": "SAMN09487630", "wgs_master": "QMIL00000000.1", "refseq_category": "reference genome", "taxid": "2249428", "species_taxid": "2249428", "organism_name": "Aliidiomarina celeris", "infraspecific_name": "strain=F3105", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/07/13", "asm_name": "ASM331687v1", "asm_submitter": "Shandong University", "gbrs_paired_asm": "GCA_003316875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/316/875/GCF_003316875.1_ASM331687v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2800863", "genome_size_ungapped": "2800863", "gc_percent": "49.500000", "replicon_count": "0", "scaffold_count": "54", "contig_count": "54", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003316875.1-RS_2024_08_15", "annotation_date": "2024-08-15", "total_gene_count": "2655", "protein_coding_gene_count": "2564", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-07-13", "dateModified": "2018-07-13", "datePublished": "2018-07-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Aliidiomarina celeris" ], "sample_taxid": [ "2249428" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Rongcheng" ], "sample_host_location_id": [], "data_size": "0.799 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2800863", "Number of Sequences": "54", "Longest Sequences (bp)": "890204", "N50 (bp)": "705659", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.6", "Number of CDSs": "2578", "Average Protein Length": "332.1", "Coding Ratio (%)": "91.7", "Number of rRNAs": "2", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aliidiomarina celeris", "strain": "strain=F3105", "accession": "GCA_003316875.1", "taxid": 2249428, "species_taxid": 2249428, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 921, "total_fragments": 922, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudidiomarina maritima", "strain": "strain=CGMCC 1.7285", "accession": "GCA_900115255.1", "taxid": 519453, "species_taxid": 519453, "relation_to_type": "type", "validated": true, "ani": 78.4382, "matched_fragments": 53, "total_fragments": 922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidiomarina taiwanensis", "strain": "strain=AIT1", "accession": "GCA_003987015.1", "taxid": 946228, "species_taxid": 946228, "relation_to_type": "type", "validated": true, "ani": 78.4252, "matched_fragments": 157, "total_fragments": 922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidiomarina haloalkalitolerans", "strain": "strain=AK5", "accession": "GCA_003987315.1", "taxid": 859059, "species_taxid": 859059, "relation_to_type": "type", "validated": true, "ani": 78.3993, "matched_fragments": 122, "total_fragments": 922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudidiomarina gelatinasegens", "strain": "strain=R04H25", "accession": "GCA_004025325.1", "taxid": 2487740, "species_taxid": 2487740, "relation_to_type": "type", "validated": true, "ani": 78.2094, "matched_fragments": 58, "total_fragments": 922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidiomarina indica", "strain": "strain=SW123", "accession": "GCA_015354615.1", "taxid": 2749147, "species_taxid": 2749147, "relation_to_type": "type", "validated": true, "ani": 78.1616, "matched_fragments": 103, "total_fragments": 922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidiomarina shirensis", "strain": "strain=AIS", "accession": "GCA_003987345.1", "taxid": 1048642, "species_taxid": 1048642, "relation_to_type": "type", "validated": true, "ani": 78.0667, "matched_fragments": 86, "total_fragments": 922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidiomarina soli", "strain": "strain=Y4G10-17", "accession": "GCA_003986975.1", "taxid": 1928574, "species_taxid": 1928574, "relation_to_type": "type", "validated": true, "ani": 77.999, "matched_fragments": 75, "total_fragments": 922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudidiomarina insulisalsae", "strain": "strain=CVS-6", "accession": "GCA_003987065.1", "taxid": 575789, "species_taxid": 575789, "relation_to_type": "type", "validated": true, "ani": 77.9513, "matched_fragments": 52, "total_fragments": 922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidiomarina halalkaliphila", "strain": "strain=IM 1326", "accession": "GCA_007096385.1", "taxid": 2593535, "species_taxid": 2593535, "relation_to_type": "type", "validated": true, "ani": 77.8994, "matched_fragments": 116, "total_fragments": 922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidiomarina minuta", "strain": "strain=MLST1", "accession": "GCA_003987145.1", "taxid": 880057, "species_taxid": 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003987315.1", "gtdb_species": "s__Aliidiomarina haloalkalitolerans", "ani": 78.4115, "matched_fragments": 121, "total_fragments": 922, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Aliidiomarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003987015.1", "gtdb_species": "s__Aliidiomarina taiwanensis", "ani": 78.4095, "matched_fragments": 157, "total_fragments": 922, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Aliidiomarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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