{ "type": "genome", "identifier": "GCF_003323715.1", "organism": "Streptomyces diacarni", "title": "Streptomyces diacarni", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ren Ji Hospital School of Medicine, Shanghai Jiao Tong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003323715.1", "bioproject": "PRJNA224116", "biosample": "SAMN09508721", "wgs_master": "QOIN00000000.1", "refseq_category": "reference genome", "taxid": "2800381", "species_taxid": "2800381", "organism_name": "Streptomyces diacarni", "infraspecific_name": "strain=LHW51701", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/07/15", "asm_name": "ASM332371v1", "asm_submitter": "Ren Ji Hospital School of Medicine, Shanghai Jiao Tong University", "gbrs_paired_asm": "GCA_003323715.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/323/715/GCF_003323715.1_ASM332371v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7661915", "genome_size_ungapped": "7661478", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "80", "contig_count": "80", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003323715.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "6612", "protein_coding_gene_count": "6361", "non_coding_gene_count": "76", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-07-15", "dateModified": "2018-07-15", "datePublished": "2018-07-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces diacarni" ], "sample_taxid": [ "2800381" ], "sample_host_organism": [ "Diacarnus 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"total_fragments": 2524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cacaoi", "strain": "strain=NBRC 12748", "accession": "GCA_006539165.1", "taxid": 1898, "species_taxid": 1898, "relation_to_type": "type", "validated": true, "ani": 82.76, "matched_fragments": 1555, "total_fragments": 2524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces paromomycinus", "strain": "strain=NBRC 15454", "accession": "GCA_003865155.1", "taxid": 92743, "species_taxid": 92743, "relation_to_type": "type", "validated": true, "ani": 80.1836, "matched_fragments": 1205, "total_fragments": 2524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rimosus subsp. rimosus", "strain": "strain=R7", "accession": "GCA_022760195.1", "taxid": 132474, "species_taxid": 1927, "relation_to_type": "type", "validated": true, "ani": 80.1285, "matched_fragments": 1224, "total_fragments": 2524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces gobiensis", "strain": "strain=1_25", "accession": "GCA_021216675.1", "taxid": 2875706, "species_taxid": 2875706, "relation_to_type": "type", "validated": true, "ani": 80.1263, "matched_fragments": 854, "total_fragments": 2524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces monomycini", "strain": "strain=NRRL B-24309", "accession": "GCA_022271435.1", "taxid": 371720, "species_taxid": 371720, "relation_to_type": "type", "validated": true, "ani": 80.1082, "matched_fragments": 1188, "total_fragments": 2524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rapamycinicus", "strain": "strain=NRRL 5491", "accession": "GCA_024298965.1", "taxid": 1226757, "species_taxid": 1226757, "relation_to_type": "type", "validated": true, "ani": 79.6784, "matched_fragments": 1244, "total_fragments": 2524, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": 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"status": "-" }, { "accession": "GCF_900111245.1", "gtdb_species": "s__Streptomyces qinglanensis", "ani": 84.7975, "matched_fragments": 1594, "total_fragments": 2524, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_006539165.1", "gtdb_species": "s__Streptomyces cacaoi", "ani": 82.7941, "matched_fragments": 1547, "total_fragments": 2524, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.44", "min_intra_species_ani": "99.09", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 7, "status": "-" } ] }, 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