{ "type": "genome", "identifier": "GCF_003324525.1", "organism": "Mucilaginibacter hurinus", "title": "Mucilaginibacter hurinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Huazhong Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003324525.1", "bioproject": "PRJNA224116", "biosample": "SAMN09212665", "wgs_master": "QGDC00000000.1", "refseq_category": "reference genome", "taxid": "2201324", "species_taxid": "2201324", "organism_name": "Mucilaginibacter hurinus", "infraspecific_name": "strain=ZR32", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/07/16", "asm_name": "ASM332452v1", "asm_submitter": "Huazhong Agricultural University", "gbrs_paired_asm": "GCA_003324525.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/324/525/GCF_003324525.1_ASM332452v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3881846", "genome_size_ungapped": "3881846", "gc_percent": "43.000000", "replicon_count": "0", "scaffold_count": "32", "contig_count": "32", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003324525.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3429", "protein_coding_gene_count": "3373", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-07-16", "dateModified": "2018-07-16", "datePublished": "2018-07-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Mucilaginibacter hurinus" ], "sample_taxid": [ "2201324" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Ulsan" ], "sample_host_location_id": [], "data_size": "1.102 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3881846", "Number of Sequences": "32", "Longest Sequences (bp)": "716430", "N50 (bp)": "440260", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.0", "Number of CDSs": "3318", "Average Protein Length": "348.3", "Coding Ratio (%)": "89.3", "Number of rRNAs": "3", "Number of tRNAs": "38", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mucilaginibacter hurinus", "strain": "strain=ZR32", "accession": "GCA_003324525.1", "taxid": 2201324, "species_taxid": 2201324, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1282, 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95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter terrigena", "strain": "strain=17JY9-4", "accession": "GCA_004168255.1", "taxid": 2492395, "species_taxid": 2492395, "relation_to_type": "type", "validated": true, "ani": 77.4985, "matched_fragments": 202, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gossypii", "strain": "strain=Gh-67", "accession": "GCA_900100945.1", "taxid": 551996, "species_taxid": 551996, "relation_to_type": "type", "validated": true, "ani": 77.4751, "matched_fragments": 196, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter corticis", "strain": "strain=MAH-19", "accession": "GCA_007558865.1", "taxid": 2597670, "species_taxid": 2597670, "relation_to_type": "type", "validated": true, "ani": 77.4022, "matched_fragments": 194, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter celer", "strain": "strain=HYN0043", "accession": "GCA_003576455.2", "taxid": 2305508, "species_taxid": 2305508, "relation_to_type": "type", "validated": true, "ani": 77.3797, "matched_fragments": 201, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gotjawali", "strain": "strain=CECT 8628", "accession": "GCA_014191635.1", "taxid": 1550579, "species_taxid": 1550579, "relation_to_type": "type", "validated": true, "ani": 77.3762, "matched_fragments": 165, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter rubeus", "strain": "strain=CGMCC 1.15913", "accession": "GCA_014643835.1", "taxid": 2027860, "species_taxid": 2027860, "relation_to_type": "suspected-type", "validated": true, "ani": 77.367, "matched_fragments": 210, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter agri", "strain": "strain=R11", "accession": "GCA_009928685.1", "taxid": 2695265, "species_taxid": 2695265, "relation_to_type": "type", "validated": true, "ani": 77.2875, "matched_fragments": 146, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter phyllosphaerae", "strain": "strain=CCM 8625", "accession": "GCA_014635525.1", "taxid": 1812349, "species_taxid": 1812349, "relation_to_type": "type", "validated": true, "ani": 77.2109, "matched_fragments": 197, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter endophyticus", "strain": "strain=RS1", "accession": "GCA_003351025.1", "taxid": 2675003, "species_taxid": 2675003, "relation_to_type": "type", "validated": true, "ani": 77.1916, "matched_fragments": 204, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter phyllosphaerae", "strain": "strain=PP-F2FG21", "accession": "GCA_004378255.1", "taxid": 1812349, "species_taxid": 1812349, "relation_to_type": "type", "validated": true, "ani": 77.1825, "matched_fragments": 198, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter phyllosphaerae", "strain": "strain=DSM 100995", "accession": "GCA_014196695.1", "taxid": 1812349, "species_taxid": 1812349, "relation_to_type": "type", "validated": true, "ani": 77.1824, "matched_fragments": 198, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gossypiicola", "strain": "strain=Gh-48", "accession": "GCA_900110105.1", "taxid": 551995, "species_taxid": 551995, "relation_to_type": "type", "validated": true, "ani": 77.1221, "matched_fragments": 204, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter achroorhodeus", "strain": "strain=MJ1a", "accession": "GCA_007846095.1", "taxid": 2599294, "species_taxid": 2599294, "relation_to_type": "type", "validated": true, "ani": 77.1042, "matched_fragments": 178, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter conchicola", "strain": "strain=MYSH2", "accession": "GCA_003432115.1", "taxid": 2303333, "species_taxid": 2303333, "relation_to_type": "type", "validated": true, "ani": 77.0942, "matched_fragments": 203, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter terrenus", "strain": "strain=ZH6", "accession": "GCA_003432065.1", "taxid": 2482727, "species_taxid": 2482727, "relation_to_type": "type", "validated": true, "ani": 76.9589, "matched_fragments": 184, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": 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"optimum_tmp": 26.0, "optimum_ph": 6.449, "genome_size": 6405217.25, "gc_content": 43.045, "coding_genes": 5407.0, "rRNA16S_genes": 2.0, "tRNA_genes": 47.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.269, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.73, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Mucilaginibacter", "hurinus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }