{ "type": "genome", "identifier": "GCF_003330725.1", "organism": "Acidisarcina polymorpha", "title": "Acidisarcina polymorpha", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Bioengineering, Research Center of Biotechnology of RAS", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003330725.1", "bioproject": "PRJNA224116", "biosample": "SAMN09460743", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2211140", "species_taxid": "2211140", "organism_name": "Acidisarcina polymorpha", "infraspecific_name": "strain=SBC82", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/07/20", "asm_name": "ASM333072v1", "asm_submitter": "Institute of Bioengineering, Research Center of Biotechnology of RAS", "gbrs_paired_asm": "GCA_003330725.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/330/725/GCF_003330725.1_ASM333072v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7600726", "genome_size_ungapped": "7600726", "gc_percent": "57.000000", "replicon_count": "5", "scaffold_count": "5", "contig_count": "5", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003330725.1-RS_2024_06_17", "annotation_date": "2024-06-17", "total_gene_count": "6324", "protein_coding_gene_count": "6173", "non_coding_gene_count": "56", "pubmed_id": "30510549" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-07-20", "dateModified": "2018-07-20", "datePublished": "2018-07-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Acidisarcina polymorpha" ], "sample_taxid": [ "2211140" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia: Nadym region of northwest Siberia, Yamalo-Nenets AO" ], "sample_host_location_id": [], "data_size": "2.165 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7600726", "Number of Sequences": "5", "Longest Sequences (bp)": "7112011", "N50 (bp)": "7112011", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.9", "Number of CDSs": "6598", "Average Protein Length": "318.5", "Coding Ratio (%)": "82.9", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acidisarcina polymorpha", "strain": "strain=SBC82", "accession": "GCA_003330725.1", "taxid": 2211140, "species_taxid": 2211140, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2530, "total_fragments": 2531, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Edaphobacter lichenicola", "strain": "strain=DSM 104462", "accession": "GCA_025264645.1", "taxid": 2051959, "species_taxid": 2051959, "relation_to_type": "suspected-type", "validated": true, "ani": 82.2554, "matched_fragments": 129, "total_fragments": 2531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Terracidiphilus gabretensis", "strain": "strain=S55", "accession": "GCA_001449115.1", "taxid": 1577687, "species_taxid": 1577687, "relation_to_type": "type", "validated": true, "ani": 79.1228, "matched_fragments": 96, "total_fragments": 2531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Edaphobacter aggregans", "strain": "strain=DSM 19364", "accession": "GCA_000745965.1", "taxid": 570835, "species_taxid": 570835, "relation_to_type": "type", "validated": true, "ani": 77.3867, "matched_fragments": 143, "total_fragments": 2531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidipila rosea", "strain": "strain=DSM 103428", "accession": "GCA_004339725.1", "taxid": 768535, "species_taxid": 768535, "relation_to_type": "type", "validated": true, "ani": 77.3281, "matched_fragments": 133, "total_fragments": 2531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Edaphobacter flagellatus", "strain": "strain=HZ411", "accession": "GCA_025264665.1", "taxid": 1933044, "species_taxid": 1933044, "relation_to_type": "type", "validated": true, "ani": 77.2578, "matched_fragments": 85, "total_fragments": 2531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silvibacterium dinghuense", "strain": "strain=CGMCC 1.13007", "accession": "GCA_014640355.1", "taxid": 1560006, "species_taxid": 1560006, "relation_to_type": "type", "validated": true, "ani": 77.1423, "matched_fragments": 166, "total_fragments": 2531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidobacterium capsulatum", "strain": "strain=ATCC 51196", "accession": "GCA_000022565.1", "taxid": 33075, "species_taxid": 33075, "relation_to_type": "type", "validated": true, "ani": 77.1412, "matched_fragments": 124, "total_fragments": 2531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Granulicella mallensis", "strain": "strain=MP5ACTX8", "accession": "GCA_000178955.2", "taxid": 940614, "species_taxid": 940614, "relation_to_type": "type", "validated": true, "ani": 77.1083, "matched_fragments": 111, "total_fragments": 2531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silvibacterium dinghuense", "strain": "strain=DHOF10", "accession": "GCA_004123295.1", "taxid": 1560006, "species_taxid": 1560006, "relation_to_type": "type", "validated": true, "ani": 77.0912, "matched_fragments": 166, "total_fragments": 2531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracidobacterium acidisoli", "strain": "strain=4G-K13", "accession": "GCA_003428625.2", "taxid": 2303751, "species_taxid": 2303751, "relation_to_type": "type", "validated": true, "ani": 76.9216, "matched_fragments": 163, "total_fragments": 2531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alloacidobacterium dinghuense", "strain": "strain=4Y35", "accession": "GCA_014274465.1", "taxid": 2763107, "species_taxid": 2763107, "relation_to_type": "type", "validated": true, "ani": 76.6773, "matched_fragments": 132, "total_fragments": 2531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Occallatibacter riparius", "strain": "strain=DSM 25168", "accession": "GCA_025264625.1", "taxid": 1002689, "species_taxid": 1002689, "relation_to_type": "type", "validated": true, "ani": 76.6136, "matched_fragments": 106, "total_fragments": 2531, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003330725.1", "gtdb_species": "s__Acidisarcina polymorpha", "ani": 100.0, "matched_fragments": 2531, "total_fragments": 2531, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Acidisarcina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_009765985.1", "gtdb_species": "s__Acidobacterium_A sp009765985", "ani": 77.5491, "matched_fragments": 172, "total_fragments": 2531, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Acidobacterium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004339725.1", "gtdb_species": "s__Acidipila rosea", "ani": 77.3618, "matched_fragments": 132, "total_fragments": 2531, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Acidipila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003858395.1", "gtdb_species": "s__EB88 sp003858395", "ani": 77.2584, "matched_fragments": 98, "total_fragments": 2531, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__EB88", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000022565.1", "gtdb_species": "s__Acidobacterium capsulatum", "ani": 77.1759, "matched_fragments": 124, "total_fragments": 2531, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Acidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_011333575.1", "gtdb_species": "s__Acidobacterium capsulatum_A", "ani": 77.1513, "matched_fragments": 108, "total_fragments": 2531, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Acidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004123295.1", "gtdb_species": "s__Silvibacterium dinghuense", "ani": 77.0912, "matched_fragments": 166, "total_fragments": 2531, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Silvibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003428625.2", "gtdb_species": "s__Palsa-343 sp003428625", "ani": 76.9362, "matched_fragments": 163, "total_fragments": 2531, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Palsa-343", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000620725.1", "gtdb_species": "s__Terracidiphilus sp000620725", "ani": 76.7921, "matched_fragments": 89, "total_fragments": 2531, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Terracidiphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003131205.1", "gtdb_species": "s__Terracidiphilus savannae", "ani": 76.759, "matched_fragments": 94, "total_fragments": 2531, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Terracidiphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013289875.1", "gtdb_species": "s__Silvibacterium sp013289875", "ani": 76.6059, "matched_fragments": 142, "total_fragments": 2531, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Silvibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903873705.1", "gtdb_species": "s__CAIQPK01 sp903873705", "ani": 76.5556, "matched_fragments": 82, "total_fragments": 2531, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__CAIQPK01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.91", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_003170825.1", "gtdb_species": "s__Terracidiphilus sp003170825", "ani": 76.419, "matched_fragments": 100, "total_fragments": 2531, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Terracidiphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.88", "min_intra_species_ani": "99.70", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCA_003166955.1", "gtdb_species": "s__Palsa-343 sp003166955", "ani": 76.2826, "matched_fragments": 118, "total_fragments": 2531, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Palsa-343", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.89", "min_intra_species_ani": "99.89", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018268755.1", "gtdb_species": "s__KAN-5 sp018268755", "ani": 75.9383, "matched_fragments": 70, "total_fragments": 2531, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__SbA1;g__KAN-5", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Acidisarcina", "polymorpha" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }