{ "type": "genome", "identifier": "GCF_003332275.1", "organism": "Edaphovirga cremea", "title": "Edaphovirga cremea", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shenyang Pharmaceutical University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003332275.1", "bioproject": "PRJNA224116", "biosample": "SAMN09521565", "wgs_master": "QOVA00000000.1", "refseq_category": "reference genome", "taxid": "2267246", "species_taxid": "2267246", "organism_name": "Edaphovirga cremea", "infraspecific_name": "strain=DSM 105170", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/07/20", "asm_name": "ASM333227v1", "asm_submitter": "Shenyang Pharmaceutical University", "gbrs_paired_asm": "GCA_003332275.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/332/275/GCF_003332275.1_ASM333227v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5193810", "genome_size_ungapped": "5193800", "gc_percent": "50.500000", "replicon_count": "0", "scaffold_count": "70", "contig_count": "70", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003332275.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "4701", "protein_coding_gene_count": "4468", "non_coding_gene_count": "91", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-07-20", "dateModified": "2018-07-20", "datePublished": "2018-07-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Edaphovirga cremea" ], "sample_taxid": [ "2267246" ], "sample_host_organism": [ "Codonopsis clematidea" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Xinjiang Uygur autonomous region" ], "sample_host_location_id": [], "data_size": "1.479 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5193810", "Number of Sequences": "70", "Longest Sequences (bp)": "639993", "N50 (bp)": "246636", "Gap Ratio (%)": "0.000193", "GCcontent (%)": "50.3", "Number of CDSs": "4618", "Average Protein Length": "315.5", "Coding Ratio (%)": "84.2", "Number of rRNAs": "1", "Number of tRNAs": "72", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Serratia quinivorans", "strain": "strain=NCTC11544", "accession": "GCA_900457075.1", "taxid": 137545, "species_taxid": 137545, "relation_to_type": "suspected-type", "validated": true, "ani": 79.6112, "matched_fragments": 522, "total_fragments": 1699, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia entomophila", "strain": "strain=A1", "accession": "GCA_021462285.1", "taxid": 42906, "species_taxid": 42906, "relation_to_type": "type", "validated": true, "ani": 79.496, "matched_fragments": 506, "total_fragments": 1699, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia liquefaciens", "strain": "strain=ATCC 27592", "accession": "GCA_000422085.1", "taxid": 614, "species_taxid": 614, "relation_to_type": "type", "validated": true, "ani": 79.4805, "matched_fragments": 519, "total_fragments": 1699, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia inhibens", "strain": "strain=S40", "accession": "GCA_003591175.1", "taxid": 2338073, "species_taxid": 2338073, "relation_to_type": "type", "validated": true, "ani": 79.4648, "matched_fragments": 521, "total_fragments": 1699, "ani_threshold": 95, 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"Serratia proteamaculans", "strain": "strain=CCUG 14510", "accession": "GCA_008830365.1", "taxid": 28151, "species_taxid": 28151, "relation_to_type": "type", "validated": true, "ani": 79.4193, "matched_fragments": 507, "total_fragments": 1699, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia nevei", "strain": "strain=S15", "accession": "GCA_008364245.1", "taxid": 2703794, "species_taxid": 2703794, "relation_to_type": "type", "validated": true, "ani": 79.4066, "matched_fragments": 475, "total_fragments": 1699, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ewingella americana", "strain": "strain=NCTC12157", "accession": "GCA_900451015.1", "taxid": 41202, "species_taxid": 41202, "relation_to_type": "type", "validated": true, "ani": 79.3866, "matched_fragments": 447, "total_fragments": 1699, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia surfactantfaciens", "strain": "strain=YD25", "accession": 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95, "status": "below_threshold" }, { "organism_name": "Rahnella woolbedingensis", "strain": "strain=DSM 27399", "accession": "GCA_003602095.1", "taxid": 1510574, "species_taxid": 1510574, "relation_to_type": "type", "validated": true, "ani": 79.0825, "matched_fragments": 499, "total_fragments": 1699, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rouxiella chamberiensis", "strain": "strain=130333", "accession": "GCA_000951135.1", "taxid": 1513468, "species_taxid": 1513468, "relation_to_type": "type", "validated": true, "ani": 78.8203, "matched_fragments": 402, "total_fragments": 1699, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pectobacterium colocasium", "strain": "strain=LJ1", "accession": "GCA_020181655.1", "taxid": 2878098, "species_taxid": 2878098, "relation_to_type": "type", "validated": true, "ani": 78.4656, "matched_fragments": 354, "total_fragments": 1699, "ani_threshold": 95, "status": "below_threshold" }, { 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