{ "type": "genome", "identifier": "GCF_003336205.1", "organism": "Chryseobacterium lacus", "title": "Chryseobacterium lacus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University at Weihai", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003336205.1", "bioproject": "PRJNA224116", "biosample": "SAMN09508505", "wgs_master": "QPIE00000000.1", "refseq_category": "reference genome", "taxid": "2058346", "species_taxid": "2058346", "organism_name": "Chryseobacterium lacus", "infraspecific_name": "strain=YLOS41", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/07/23", "asm_name": "ASM333620v1", "asm_submitter": "Shandong University at Weihai", "gbrs_paired_asm": "GCA_003336205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/336/205/GCF_003336205.1_ASM333620v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2375938", "genome_size_ungapped": "2375938", "gc_percent": "39.500000", "replicon_count": "0", "scaffold_count": "32", "contig_count": "32", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003336205.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2217", "protein_coding_gene_count": "2147", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-07-23", "dateModified": "2018-07-23", "datePublished": "2018-07-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium lacus" ], "sample_taxid": [ "2058346" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Yunnan" ], "sample_host_location_id": [], "data_size": "0.669 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2375938", "Number of Sequences": "32", "Longest Sequences (bp)": "429684", "N50 (bp)": "349994", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.7", "Number of CDSs": "2134", "Average Protein Length": "327.8", "Coding Ratio (%)": "88.3", "Number of rRNAs": "3", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium lacus", "strain": "strain=YLOS41", "accession": "GCA_003984675.1", "taxid": 2058346, "species_taxid": 2058346, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 778, 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"below_threshold" }, { "organism_name": "Chryseobacterium faecale", "strain": "strain=F4", "accession": "GCA_019195395.1", "taxid": 2852098, "species_taxid": 2852098, "relation_to_type": "type", "validated": true, "ani": 77.5586, "matched_fragments": 148, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium echinoideorum", "strain": "strain=CC-CZW010", "accession": "GCA_007474535.1", "taxid": 1549648, "species_taxid": 1549648, "relation_to_type": "type", "validated": true, "ani": 77.5013, "matched_fragments": 138, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistella daneshvariae", "strain": "strain=H3001", "accession": "GCA_003860505.1", "taxid": 2487074, "species_taxid": 2487074, "relation_to_type": "type", "validated": true, "ani": 77.0947, "matched_fragments": 139, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistella carnis", "strain": "strain=G0081", "accession": "GCA_003860585.1", "taxid": 1241979, "species_taxid": 1241979, "relation_to_type": "type", "validated": true, "ani": 77.091, "matched_fragments": 126, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium scophthalmum", "strain": "strain=DSM 16779", "accession": "GCA_900143185.1", "taxid": 59733, "species_taxid": 59733, "relation_to_type": "type", "validated": true, "ani": 77.0689, "matched_fragments": 141, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium indologenes", "strain": "strain=NBRC 14944", "accession": "GCA_000520835.1", "taxid": 253, "species_taxid": 253, "relation_to_type": "type", "validated": true, "ani": 77.0379, "matched_fragments": 112, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium indologenes", "strain": "strain=NCTC10796", "accession": "GCA_900460995.1", "taxid": 253, "species_taxid": 253, "relation_to_type": "type", "validated": true, "ani": 76.9943, "matched_fragments": 114, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium geocarposphaerae", "strain": "strain=DSM 27617", "accession": "GCA_002797535.1", "taxid": 1416776, "species_taxid": 1416776, "relation_to_type": "type", "validated": true, "ani": 76.9895, "matched_fragments": 124, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 76.9429, "matched_fragments": 133, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium schmidteae", "strain": "strain=Marseille-P9602", "accession": "GCA_903166575.1", "taxid": 2730404, "species_taxid": 2730404, "relation_to_type": "type", "validated": true, "ani": 76.8856, "matched_fragments": 138, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium daecheongense", "strain": "strain=DSM 15235", "accession": "GCA_003729955.1", "taxid": 192389, "species_taxid": 192389, "relation_to_type": "type", "validated": true, "ani": 76.8652, "matched_fragments": 121, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium daecheongense", "strain": "strain=DSM 15235", "accession": "GCA_004365465.1", "taxid": 192389, "species_taxid": 192389, "relation_to_type": "type", "validated": true, "ani": 76.8632, "matched_fragments": 122, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium formosense", "strain": "strain=DSM 17452", "accession": "GCA_900116415.1", "taxid": 236814, "species_taxid": 236814, 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