{
    "type": "genome",
    "identifier": "GCF_003336225.1",
    "organism": "Corallincola holothuriorum",
    "title": "Corallincola holothuriorum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "shandong university",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003336225.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN09668232",
        "wgs_master": "QPID00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2282215",
        "species_taxid": "2282215",
        "organism_name": "Corallincola holothuriorum",
        "infraspecific_name": "strain=C4",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/07/23",
        "asm_name": "ASM333622v1",
        "asm_submitter": "shandong university",
        "gbrs_paired_asm": "GCA_003336225.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/336/225/GCF_003336225.1_ASM333622v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4308247",
        "genome_size_ungapped": "4308247",
        "gc_percent": "49.000000",
        "replicon_count": "0",
        "scaffold_count": "30",
        "contig_count": "30",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003336225.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "3833",
        "protein_coding_gene_count": "3739",
        "non_coding_gene_count": "72",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-07-23",
    "dateModified": "2018-07-23",
    "datePublished": "2018-07-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Corallincola holothuriorum"
        ],
        "sample_taxid": [
            "2282215"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Weihai"
        ],
        "sample_host_location_id": [],
        "data_size": "1.232 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4308247",
        "Number of Sequences": "30",
        "Longest Sequences (bp)": "681548",
        "N50 (bp)": "337796",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "49.0",
        "Number of CDSs": "3772",
        "Average Protein Length": "337.0",
        "Coding Ratio (%)": "88.5",
        "Number of rRNAs": "3",
        "Number of tRNAs": "62",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Ferrimonas lipolytica",
                "strain": "strain=S7",
                "accession": "GCA_012295575.1",
                "taxid": 2724191,
                "species_taxid": 2724191,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2456,
                "matched_fragments": 55,
                "total_fragments": 1421,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ferrimonas aestuarii",
                "strain": "strain=IMCC35002",
                "accession": "GCA_005116665.1",
                "taxid": 2569539,
                "species_taxid": 2569539,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0121,
                "matched_fragments": 52,
                "total_fragments": 1421,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_004336975.1",
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                "matched_fragments": 1275,
                "total_fragments": 1421,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Neiellaceae;g__Corallincola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.11",
                "min_intra_species_ani": "98.10",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900115495.1",
                "gtdb_species": "s__Enterovibrio norvegicus",
                "ani": 76.7911,
                "matched_fragments": 50,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Enterovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.84",
                "min_intra_species_ani": "95.33",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 14,
                "status": "-"
            },
            {
                "accession": "GCF_012295575.1",
                "gtdb_species": "s__Ferrimonas lipolytica",
                "ani": 76.2491,
                "matched_fragments": 55,
                "total_fragments": 1421,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Ferrimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005116665.1",
                "gtdb_species": "s__Ferrimonas sp005116665",
                "ani": 75.9884,
                "matched_fragments": 53,
                "total_fragments": 1421,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Ferrimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Corallincola",
        "holothuriorum"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}