{ "type": "genome", "identifier": "GCF_003336665.1", "organism": "Vreelandella rituensis", "title": "Vreelandella rituensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003336665.1", "bioproject": "PRJNA224116", "biosample": "SAMN09685115", "wgs_master": "QPIJ00000000.1", "refseq_category": "reference genome", "taxid": "2282306", "species_taxid": "2282306", "organism_name": "Vreelandella rituensis", "infraspecific_name": "strain=TQ8S", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/07/24", "asm_name": "ASM333666v1", "asm_submitter": "Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_003336665.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/336/665/GCF_003336665.1_ASM333666v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4474525", "genome_size_ungapped": "4474055", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "178", "contig_count": "178", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003336665.1-RS_2024_04_07", "annotation_date": "2024-04-07", "total_gene_count": "4320", "protein_coding_gene_count": "4093", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-07-24", "dateModified": "2018-07-24", "datePublished": "2018-07-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Vreelandella rituensis" ], "sample_taxid": [ "2282306" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Tibetan Plateau" ], "sample_host_location_id": [], "data_size": "1.278 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4474525", "Number of Sequences": "178", "Longest Sequences (bp)": "364811", "N50 (bp)": "57633", "Gap Ratio (%)": "0.011040", "GCcontent (%)": "57.2", "Number of CDSs": "4126", "Average Protein Length": "313.2", "Coding Ratio (%)": "86.6", "Number of rRNAs": "2", "Number of tRNAs": "57", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomonas rituensis", "strain": "strain=TQ8S", "accession": "GCA_003336665.1", "taxid": 2282306, "species_taxid": 2282306, 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