{
    "type": "genome",
    "identifier": "GCF_003336805.1",
    "organism": "Marinospirillum perlucidum",
    "title": "Marinospirillum perlucidum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Shandong University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003336805.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN09078362",
        "wgs_master": "QFWJ00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1982602",
        "species_taxid": "1982602",
        "organism_name": "Marinospirillum perlucidum",
        "infraspecific_name": "strain=F3212",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/07/24",
        "asm_name": "ASM333680v1",
        "asm_submitter": "Shandong University",
        "gbrs_paired_asm": "GCA_003336805.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/336/805/GCF_003336805.1_ASM333680v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3072778",
        "genome_size_ungapped": "3072778",
        "gc_percent": "53.500000",
        "replicon_count": "0",
        "scaffold_count": "24",
        "contig_count": "24",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003336805.1-RS_2024_05_04",
        "annotation_date": "2024-05-04",
        "total_gene_count": "2896",
        "protein_coding_gene_count": "2826",
        "non_coding_gene_count": "57",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-07-24",
    "dateModified": "2018-07-24",
    "datePublished": "2018-07-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Marinospirillum perlucidum"
        ],
        "sample_taxid": [
            "1982602"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Wei hai"
        ],
        "sample_host_location_id": [],
        "data_size": "0.872 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3072778",
        "Number of Sequences": "24",
        "Longest Sequences (bp)": "534144",
        "N50 (bp)": "490887",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "53.4",
        "Number of CDSs": "2841",
        "Average Protein Length": "329.8",
        "Coding Ratio (%)": "91.5",
        "Number of rRNAs": "5",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Marinospirillum perlucidum",
                "strain": "strain=F3212",
                "accession": "GCA_003336805.1",
                "taxid": 1982602,
                "species_taxid": 1982602,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1011,
                "total_fragments": 1013,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Marinospirillum celere",
                "strain": "strain=DSM 18438",
                "accession": "GCA_900112235.1",
                "taxid": 1122252,
                "species_taxid": 1122252,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9315,
                "matched_fragments": 343,
                "total_fragments": 1013,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinospirillum alkaliphilum",
                "strain": "strain=DSM 21637",
                "accession": "GCA_900119735.1",
                "taxid": 148454,
                "species_taxid": 148454,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3761,
                "matched_fragments": 300,
                "total_fragments": 1013,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinospirillum insulare",
                "strain": "strain=DSM 21763",
                "accession": "GCA_000686905.1",
                "taxid": 217169,
                "species_taxid": 217169,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4924,
                "matched_fragments": 73,
                "total_fragments": 1013,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinospirillum minutulum",
                "strain": "strain=DSM 6287",
                "accession": "GCA_000422325.1",
                "taxid": 64974,
                "species_taxid": 64974,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3829,
                "matched_fragments": 78,
                "total_fragments": 1013,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinobacterium stanieri",
                "strain": "strain=DSM 7027",
                "accession": "GCA_900155945.1",
                "taxid": 49186,
                "species_taxid": 49186,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4041,
                "matched_fragments": 77,
                "total_fragments": 1013,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas campaniensis",
                "strain": "strain=5AG",
                "accession": "GCA_014193375.1",
                "taxid": 213554,
                "species_taxid": 213554,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3961,
                "matched_fragments": 57,
                "total_fragments": 1013,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinobacter similis",
                "strain": "strain=A3d10",
                "accession": "GCA_000830985.1",
                "taxid": 1420916,
                "species_taxid": 1420916,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2298,
                "matched_fragments": 70,
                "total_fragments": 1013,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanobacter mangrovi",
                "strain": "strain=SM2-42",
                "accession": "GCA_019740315.1",
                "taxid": 2862510,
                "species_taxid": 2862510,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2225,
                "matched_fragments": 67,
                "total_fragments": 1013,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas organivorans",
                "strain": "strain=CECT 5995",
                "accession": "GCA_014192055.1",
                "taxid": 257772,
                "species_taxid": 257772,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1635,
                "matched_fragments": 62,
                "total_fragments": 1013,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas smyrnensis",
                "strain": "strain=AAD6",
                "accession": "GCA_000265245.2",
                "taxid": 720605,
                "species_taxid": 720605,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1625,
                "matched_fragments": 60,
                "total_fragments": 1013,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinobacter gudaonensis",
                "strain": "strain=CGMCC 1.6294",
                "accession": "GCA_900115175.1",
                "taxid": 375760,
                "species_taxid": 375760,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1567,
                "matched_fragments": 60,
                "total_fragments": 1013,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas aerodenitrificans",
                "strain": "strain=MCCC 1A11058",
                "accession": "GCA_021404405.1",
                "taxid": 2733483,
                "species_taxid": 2733483,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0571,
                "matched_fragments": 71,
                "total_fragments": 1013,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas litopenaei",
                "strain": "strain=SYSU ZJ2214",
                "accession": "GCA_003045775.1",
                "taxid": 2109328,
                "species_taxid": 2109328,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9899,
                "matched_fragments": 76,
                "total_fragments": 1013,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinobacterium rhizophilum",
                "strain": "strain=DSM 18822",
                "accession": "GCA_000378045.1",
                "taxid": 420402,
                "species_taxid": 420402,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9474,
                "matched_fragments": 68,
                "total_fragments": 1013,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas ilicicola",
                "strain": "strain=DSM 19980",
                "accession": "GCA_900128925.1",
                "taxid": 480814,
                "species_taxid": 480814,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9372,
                "matched_fragments": 64,
                "total_fragments": 1013,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alcanivorax nanhaiticus",
                "strain": "strain=19-m-6",
                "accession": "GCA_000756665.1",
                "taxid": 1177154,
                "species_taxid": 1177154,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7324,
                "matched_fragments": 55,
                "total_fragments": 1013,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003336805.1",
                "gtdb_species": "s__Marinospirillum perlucidum",
                "ani": 100.0,
                "matched_fragments": 1011,
                "total_fragments": 1013,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Marinospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900112235.1",
                "gtdb_species": "s__Marinospirillum celere",
                "ani": 78.9004,
                "matched_fragments": 346,
                "total_fragments": 1013,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Marinospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900119735.1",
                "gtdb_species": "s__Marinospirillum alkaliphilum",
                "ani": 78.3876,
                "matched_fragments": 299,
                "total_fragments": 1013,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Marinospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_007116195.1",
                "gtdb_species": "s__Marinospirillum sp007116195",
                "ani": 78.03,
                "matched_fragments": 95,
                "total_fragments": 1013,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Marinospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014859565.1",
                "gtdb_species": "s__Marinospirillum sp014859565",
                "ani": 77.9954,
                "matched_fragments": 261,
                "total_fragments": 1013,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Marinospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_007116865.1",
                "gtdb_species": "s__Marinospirillum sp007116865",
                "ani": 77.5498,
                "matched_fragments": 129,
                "total_fragments": 1013,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Marinospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_007119985.1",
                "gtdb_species": "s__Marinospirillum sp007119985",
                "ani": 77.0441,
                "matched_fragments": 118,
                "total_fragments": 1013,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Marinospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900155945.1",
                "gtdb_species": "s__Marinobacterium stanieri",
                "ani": 76.4727,
                "matched_fragments": 73,
                "total_fragments": 1013,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__Marinobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.47",
                "min_intra_species_ani": "96.47",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_015645095.1",
                "gtdb_species": "s__Halomonas_F sp015645095",
                "ani": 76.4238,
                "matched_fragments": 76,
                "total_fragments": 1013,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas_F",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001971685.1",
                "gtdb_species": "s__Halomonas_B sp001971685",
                "ani": 76.3981,
                "matched_fragments": 62,
                "total_fragments": 1013,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900107855.1",
                "gtdb_species": "s__Marinobacterium georgiense",
                "ani": 76.3057,
                "matched_fragments": 67,
                "total_fragments": 1013,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__Marinobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.23",
                "min_intra_species_ani": "97.23",
                "mean_intra_species_af": "0.75",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_000830985.1",
                "gtdb_species": "s__Marinobacter similis",
                "ani": 76.2873,
                "matched_fragments": 66,
                "total_fragments": 1013,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900115175.1",
                "gtdb_species": "s__Marinobacter gudaonensis",
                "ani": 76.1927,
                "matched_fragments": 57,
                "total_fragments": 1013,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017303055.1",
                "gtdb_species": "s__Halomonas litopenaei_A",
                "ani": 76.0393,
                "matched_fragments": 59,
                "total_fragments": 1013,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003045775.1",
                "gtdb_species": "s__Halomonas litopenaei",
                "ani": 76.034,
                "matched_fragments": 75,
                "total_fragments": 1013,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.31",
                "min_intra_species_ani": "97.80",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_014207935.1",
                "gtdb_species": "s__Pseudomonas_E fluvialis_A",
                "ani": 75.785,
                "matched_fragments": 57,
                "total_fragments": 1013,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.58,
        "cell_length": 0.457,
        "doubling_h": null,
        "growth_tmp": 26.5,
        "optimum_tmp": 32.25,
        "optimum_ph": 8.0,
        "genome_size": 2965402.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 1.0
    },
    "_genome_taxon": [
        "Marinospirillum",
        "perlucidum"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}