{ "type": "genome", "identifier": "GCF_003337235.1", "organism": "Halopolyspora algeriensis", "title": "Halopolyspora algeriensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003337235.1", "bioproject": "PRJNA224116", "biosample": "SAMN09074799", "wgs_master": "QPJC00000000.1", "refseq_category": "na", "taxid": "1500506", "species_taxid": "1500506", "organism_name": "Halopolyspora algeriensis", "infraspecific_name": "strain=CECT 8575", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/07/24", "asm_name": "ASM333723v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003337235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/337/235/GCF_003337235.1_ASM333723v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4565527", "genome_size_ungapped": "4564656", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "35", "contig_count": "35", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003337235.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4340", "protein_coding_gene_count": "4207", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-07-24", "dateModified": "2018-07-24", "datePublished": "2018-07-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Halopolyspora algeriensis" ], "sample_taxid": [ "1500506" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.248 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4565527", "Number of Sequences": "35", "Longest Sequences (bp)": "705418", "N50 (bp)": "263637", "Gap Ratio (%)": "0.019078", "GCcontent (%)": "68.2", "Number of CDSs": "4306", "Average Protein Length": "309.0", "Coding Ratio (%)": "87.4", "Number of rRNAs": "1", "Number of tRNAs": "55", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halopolyspora algeriensis", "strain": "strain=CECT 8575", "accession": "GCA_003337235.1", "taxid": 1500506, "species_taxid": 1500506, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1502, 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"below_threshold" }, { "organism_name": "Saccharopolyspora erythraea", "strain": "strain=NRRL 2338", "accession": "GCA_000171635.1", "taxid": 1836, "species_taxid": 1836, "relation_to_type": "type", "validated": true, "ani": 79.6646, "matched_fragments": 767, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora subtropica", "strain": "strain=CGMCC 4.7206", "accession": "GCA_014646075.1", "taxid": 1530170, "species_taxid": 1530170, "relation_to_type": "type", "validated": true, "ani": 79.602, "matched_fragments": 656, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora hordei", "strain": "strain=DSM 44065", "accession": "GCA_013410345.1", "taxid": 1838, "species_taxid": 1838, "relation_to_type": "type", "validated": true, "ani": 79.5511, "matched_fragments": 713, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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