{ "type": "genome", "identifier": "GCF_003337495.1", "organism": "Yoonia sediminilitoris", "title": "Yoonia sediminilitoris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003337495.1", "bioproject": "PRJNA224116", "biosample": "SAMN09074742", "wgs_master": "QPJP00000000.1", "refseq_category": "na", "taxid": "1286148", "species_taxid": "1286148", "organism_name": "Yoonia sediminilitoris", "infraspecific_name": "strain=CECT 8284", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/07/24", "asm_name": "ASM333749v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003337495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/337/495/GCF_003337495.1_ASM333749v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4668516", "genome_size_ungapped": "4667640", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "48", "contig_count": "48", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003337495.1-RS_2024_09_23", "annotation_date": "2024-09-23", "total_gene_count": "4557", "protein_coding_gene_count": "4398", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-07-24", "dateModified": "2018-07-24", "datePublished": "2018-07-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Yoonia sediminilitoris" ], "sample_taxid": [ "1286148" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.321 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4668516", "Number of Sequences": "48", "Longest Sequences (bp)": "1029558", "N50 (bp)": "208218", "Gap Ratio (%)": "0.018764", "GCcontent (%)": "57.2", "Number of CDSs": "4567", "Average Protein Length": "302.2", "Coding Ratio (%)": "88.7", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Yoonia sediminilitoris", "strain": "strain=CECT 8284", "accession": "GCA_003337495.1", "taxid": 1286148, "species_taxid": 1286148, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1530, "total_fragments": 1531, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Yoonia sediminilitoris", "strain": "strain=DSM 29955", "accession": "GCA_003058085.1", "taxid": 1286148, "species_taxid": 1286148, "relation_to_type": "type", "validated": true, "ani": 99.9994, "matched_fragments": 1529, "total_fragments": 1531, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Yoonia rosea", "strain": "strain=DSM 29591", "accession": "GCA_900156505.1", "taxid": 287098, "species_taxid": 287098, "relation_to_type": "type", "validated": true, "ani": 78.2841, "matched_fragments": 394, "total_fragments": 1531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yoonia vestfoldensis", "strain": "strain=DSM 16212", "accession": "GCA_000382265.1", "taxid": 245188, "species_taxid": 245188, "relation_to_type": "type", "validated": true, "ani": 78.1247, "matched_fragments": 406, "total_fragments": 1531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yoonia maricola", "strain": "strain=DSM 29128", "accession": "GCA_002797915.1", "taxid": 420999, "species_taxid": 420999, "relation_to_type": "type", "validated": true, "ani": 77.8981, "matched_fragments": 370, "total_fragments": 1531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yoonia tamlensis", "strain": "strain=DSM 26879", "accession": "GCA_900115105.1", "taxid": 390270, "species_taxid": 390270, "relation_to_type": "type", "validated": true, "ani": 77.8027, "matched_fragments": 357, "total_fragments": 1531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yoonia litorea", "strain": "strain=DSM 29433", "accession": "GCA_900114675.1", "taxid": 1123755, "species_taxid": 1123755, "relation_to_type": "type", "validated": true, "ani": 77.6577, "matched_fragments": 286, "total_fragments": 1531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Loktanella salsilacus", "strain": "strain=DSM 16199", "accession": "GCA_900114485.1", "taxid": 195913, "species_taxid": 195913, "relation_to_type": "type", "validated": true, "ani": 77.0186, "matched_fragments": 251, "total_fragments": 1531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alexandriicola marinus", "strain": "strain=LZ-14", "accession": "GCA_004000435.1", "taxid": 2081710, "species_taxid": 2081710, "relation_to_type": "type", "validated": true, "ani": 76.8059, "matched_fragments": 203, "total_fragments": 1531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudophaeobacter flagellatus", "strain": "strain=MA21411-1", "accession": "GCA_021228235.1", "taxid": 2899119, "species_taxid": 2899119, "relation_to_type": "type", "validated": true, "ani": 76.784, "matched_fragments": 158, "total_fragments": 1531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivita boseongensis", "strain": "strain=BS-B2", "accession": "GCA_001262635.1", "taxid": 1470562, 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