{
    "type": "genome",
    "identifier": "GCF_003339815.1",
    "organism": "Eggerthella sinensis",
    "title": "Eggerthella sinensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "UCSF",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003339815.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN08365985",
        "wgs_master": "PPTT00000000.1",
        "refseq_category": "reference genome",
        "taxid": "242230",
        "species_taxid": "242230",
        "organism_name": "Eggerthella sinensis",
        "infraspecific_name": "strain=DSM 16107",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/07/25",
        "asm_name": "ASM333981v1",
        "asm_submitter": "UCSF",
        "gbrs_paired_asm": "GCA_003339815.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/339/815/GCF_003339815.1_ASM333981v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4012476",
        "genome_size_ungapped": "4012476",
        "gc_percent": "65.000000",
        "replicon_count": "0",
        "scaffold_count": "75",
        "contig_count": "75",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003339815.1-RS_2024_04_27",
        "annotation_date": "2024-04-27",
        "total_gene_count": "3488",
        "protein_coding_gene_count": "3406",
        "non_coding_gene_count": "56",
        "pubmed_id": "29761785"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-07-25",
    "dateModified": "2018-07-25",
    "datePublished": "2018-07-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Eggerthella sinensis"
        ],
        "sample_taxid": [
            "242230"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Hong Kong"
        ],
        "sample_host_location_id": [],
        "data_size": "1.104 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4012476",
        "Number of Sequences": "75",
        "Longest Sequences (bp)": "254517",
        "N50 (bp)": "117282",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "65.1",
        "Number of CDSs": "3431",
        "Average Protein Length": "349.7",
        "Coding Ratio (%)": "89.7",
        "Number of rRNAs": "3",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Eggerthella sinensis",
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                "accession": "GCA_003339815.1",
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                "species_taxid": 242230,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1298,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Eggerthella sinensis",
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                "accession": "GCA_003725965.1",
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                "species_taxid": 242230,
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                "validated": true,
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                "status": "conclusive"
            },
            {
                "organism_name": "Eggerthella guodeyinii",
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                "accession": "GCA_009834925.2",
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                "species_taxid": 2690837,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eggerthella timonensis",
                "strain": "strain=Marseille-P3135",
                "accession": "GCA_900184265.1",
                "taxid": 1871008,
                "species_taxid": 1871008,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.2079,
                "matched_fragments": 923,
                "total_fragments": 1301,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eggerthella lenta",
                "strain": "strain=UCSF2243",
                "accession": "GCA_003339945.1",
                "taxid": 84112,
                "species_taxid": 84112,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.3712,
                "matched_fragments": 817,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eggerthella lenta",
                "strain": "strain=ATCC 25559",
                "accession": "GCA_003340105.1",
                "taxid": 84112,
                "species_taxid": 84112,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.3525,
                "matched_fragments": 810,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eggerthella lenta",
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                "accession": "GCA_000024265.1",
                "taxid": 84112,
                "species_taxid": 84112,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.3021,
                "matched_fragments": 840,
                "total_fragments": 1301,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonibacter urolithinfaciens",
                "strain": "strain=DSM 27213",
                "accession": "GCA_003788975.1",
                "taxid": 1335613,
                "species_taxid": 1335613,
                "relation_to_type": "type",
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                "ani": 83.6622,
                "matched_fragments": 655,
                "total_fragments": 1301,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003339815.1",
                "gtdb_species": "s__Eggerthella sinensis",
                "ani": 100.0,
                "matched_fragments": 1298,
                "total_fragments": 1301,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Eggerthella",
                "ani_circumscription_radius": 95.0,
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                "min_intra_species_ani": "98.15",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_009834925.2",
                "gtdb_species": "s__Eggerthella sp014287365",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Eggerthella",
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                "mean_intra_species_ani": "97.74",
                "min_intra_species_ani": "96.91",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900184265.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Eggerthella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_000024265.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Eggerthella",
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                "min_intra_species_af": "0.82",
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                "status": "-"
            },
            {
                "accession": "GCF_902386925.1",
                "gtdb_species": "s__Arabia massiliensis",
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                "total_fragments": 1301,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Arabia",
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                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
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            },
            {
                "accession": "GCF_900199375.1",
                "gtdb_species": "s__Gordonibacter urolithinfaciens",
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                "matched_fragments": 677,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Gordonibacter",
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        ]
    },
    "_bac2feature": {
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        "cell_length": -0.699,
        "doubling_h": null,
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        "gc_content": 64.221,
        "coding_genes": 3033.75,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 48.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
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        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
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        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
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    "_genome_taxon": [
        "Eggerthella",
        "sinensis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}