{ "type": "genome", "identifier": "GCF_003340475.1", "organism": "Alteripontixanthobacter maritimus", "title": "Alteripontixanthobacter maritimus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hankuk University of Foreign Studies", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003340475.1", "bioproject": "PRJNA224116", "biosample": "SAMN08888560", "wgs_master": "QBKA00000000.1", "refseq_category": "reference genome", "taxid": "2161824", "species_taxid": "2161824", "organism_name": "Alteripontixanthobacter maritimus", "infraspecific_name": "strain=HME9302", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/07/25", "asm_name": "ASM334047v1", "asm_submitter": "Hankuk University of Foreign Studies", "gbrs_paired_asm": "GCA_003340475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/340/475/GCF_003340475.1_ASM334047v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2676898", "genome_size_ungapped": "2676898", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003340475.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "2627", "protein_coding_gene_count": "2556", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-07-25", "dateModified": "2018-07-25", "datePublished": "2018-07-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Alteripontixanthobacter maritimus" ], "sample_taxid": [ "2161824" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Shinan" ], "sample_host_location_id": [], "data_size": "0.751 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2676898", "Number of Sequences": "2", "Longest Sequences (bp)": "2658196", "N50 (bp)": "2658196", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.8", "Number of CDSs": "2582", "Average Protein Length": "313.5", "Coding Ratio (%)": "90.7", "Number of rRNAs": "3", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alteripontixanthobacter maritimus", "strain": "strain=HME9302", "accession": "GCA_003340475.1", "taxid": 2161824, 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"total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter odishensis", "strain": "strain=KCTC 23981", "accession": "GCA_003605195.1", "taxid": 1155476, "species_taxid": 1155476, "relation_to_type": "type", "validated": true, "ani": 77.8908, "matched_fragments": 244, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marensis", "strain": "strain=DSM 21428", "accession": "GCA_001461885.1", "taxid": 543877, "species_taxid": 543877, "relation_to_type": "type", "validated": true, "ani": 77.8895, "matched_fragments": 282, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania gelatinilytica", "strain": "strain=1NDH1", "accession": "GCA_019711315.1", "taxid": 2867231, "species_taxid": 2867231, "relation_to_type": "type", "validated": true, "ani": 77.8824, "matched_fragments": 294, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium atlanticum", "strain": "strain=DSM 100738", "accession": "GCA_014199315.1", "taxid": 1267766, "species_taxid": 1267766, "relation_to_type": "type", "validated": true, "ani": 77.869, "matched_fragments": 225, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania vesicularis", "strain": "strain=1NDH10", "accession": "GCA_019711415.1", "taxid": 2867232, "species_taxid": 2867232, "relation_to_type": "type", "validated": true, "ani": 77.8271, "matched_fragments": 245, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium atlanticum", "strain": "strain=26DY36", "accession": "GCA_001008165.2", "taxid": 1267766, "species_taxid": 1267766, "relation_to_type": "type", "validated": true, "ani": 77.8218, "matched_fragments": 225, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter dokdonensis", "strain": "strain=DSW-74", "accession": "GCA_001677335.1", "taxid": 328225, "species_taxid": 328225, "relation_to_type": "type", "validated": true, "ani": 77.7934, "matched_fragments": 250, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteriqipengyuania abyssalis", "strain": "strain=NZ-12B", "accession": "GCA_019857185.1", "taxid": 2860200, "species_taxid": 2860200, "relation_to_type": "type", "validated": true, "ani": 77.7594, "matched_fragments": 306, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter dokdonensis", "strain": "strain=DSM 17193", "accession": "GCA_002155305.1", "taxid": 328225, "species_taxid": 328225, "relation_to_type": "type", "validated": true, "ani": 77.7322, "matched_fragments": 247, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter aerophilus", "strain": "strain=Ery1", "accession": "GCA_003581645.1", "taxid": 2306995, "species_taxid": 2306995, "relation_to_type": "type", "validated": true, "ani": 77.7214, "matched_fragments": 275, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter luteus", "strain": "strain=KA37", "accession": "GCA_001010945.1", "taxid": 1581420, "species_taxid": 1581420, "relation_to_type": "type", "validated": true, "ani": 77.6627, "matched_fragments": 257, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania flava", "strain": "strain=DSM 16421", "accession": "GCA_011762005.1", "taxid": 192812, "species_taxid": 192812, "relation_to_type": "type", "validated": true, "ani": 77.6403, "matched_fragments": 275, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania aerophila", "strain": "strain=GH25", "accession": "GCA_019711555.1", "taxid": 2867242, "species_taxid": 2867242, "relation_to_type": "type", "validated": true, "ani": 77.6248, "matched_fragments": 218, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allopontixanthobacter confluentis", "strain": "strain=KCTC 52259", "accession": "GCA_009827615.1", "taxid": 1849021, "species_taxid": 1849021, "relation_to_type": "type", "validated": true, "ani": 77.6133, "matched_fragments": 269, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania pacifica", "strain": "strain=NZ-96", "accession": "GCA_019857205.1", "taxid": 2860199, "species_taxid": 2860199, "relation_to_type": "type", "validated": true, "ani": 77.5774, "matched_fragments": 215, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter rhizovicinus", "strain": "strain=AY-3R", "accession": "GCA_004135625.1", "taxid": 2268576, "species_taxid": 2268576, 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100.0, "matched_fragments": 885, "total_fragments": 892, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteripontixanthobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_001687545.1", "gtdb_species": "s__Paraurantiacibacter namhicola", "ani": 78.1771, "matched_fragments": 297, "total_fragments": 892, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Paraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009827295.1", "gtdb_species": "s__Qipengyuania pelagi", "ani": 78.1116, "matched_fragments": 341, "total_fragments": 892, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Qipengyuania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015999305.1", "gtdb_species": "s__Alteriqipengyuania sp015999305", "ani": 78.0805, "matched_fragments": 322, "total_fragments": 892, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteriqipengyuania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004114695.1", "gtdb_species": "s__Parerythrobacter sp004114695", "ani": 78.0424, 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