{
    "type": "genome",
    "identifier": "GCF_003344045.1",
    "organism": "Marinobacter vulgaris",
    "title": "Marinobacter vulgaris",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Shandong Uniwersity at Weihai",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003344045.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN09196822",
        "wgs_master": "QFWX00000000.1",
        "refseq_category": "na",
        "taxid": "1928331",
        "species_taxid": "1928331",
        "organism_name": "Marinobacter vulgaris",
        "infraspecific_name": "strain=F01",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/06/07",
        "asm_name": "ASM334404v1",
        "asm_submitter": "Shandong Uniwersity at Weihai",
        "gbrs_paired_asm": "GCA_003344045.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/344/045/GCF_003344045.1_ASM334404v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3811936",
        "genome_size_ungapped": "3811652",
        "gc_percent": "57.500000",
        "replicon_count": "0",
        "scaffold_count": "69",
        "contig_count": "69",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003344045.1-RS_2024_11_26",
        "annotation_date": "2024-11-26",
        "total_gene_count": "3587",
        "protein_coding_gene_count": "3479",
        "non_coding_gene_count": "63",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-06-07",
    "dateModified": "2018-06-07",
    "datePublished": "2018-06-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Marinobacter vulgaris"
        ],
        "sample_taxid": [
            "1928331"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Shandong"
        ],
        "sample_host_location_id": [],
        "data_size": "1.083 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3811936",
        "Number of Sequences": "69",
        "Longest Sequences (bp)": "699022",
        "N50 (bp)": "650374",
        "Gap Ratio (%)": "0.007765",
        "GCcontent (%)": "57.6",
        "Number of CDSs": "3506",
        "Average Protein Length": "326.4",
        "Coding Ratio (%)": "90.1",
        "Number of rRNAs": "1",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Marinobacter vulgaris",
                "strain": "strain=F01",
                "accession": "GCA_003344045.1",
                "taxid": 1928331,
                "species_taxid": 1928331,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1251,
                "total_fragments": 1252,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Marinobacter vulgaris",
                "strain": "strain=F01",
                "accession": "GCA_007559285.1",
                "taxid": 1928331,
                "species_taxid": 1928331,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9989,
                "matched_fragments": 1250,
                "total_fragments": 1252,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Marinobacter orientalis",
                "strain": "strain=W62",
                "accession": "GCA_004792665.1",
                "taxid": 1928859,
                "species_taxid": 1928859,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.4333,
                "matched_fragments": 1004,
                "total_fragments": 1252,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinobacter orientalis",
                "strain": "strain=W62",
                "accession": "GCA_012956055.1",
                "taxid": 1928859,
                "species_taxid": 1928859,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.4204,
                "matched_fragments": 1032,
                "total_fragments": 1252,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinobacter denitrificans",
                "strain": "strain=JB02H27",
                "accession": "GCA_008795955.1",
                "taxid": 2597703,
                "species_taxid": 2597703,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.2864,
                "matched_fragments": 919,
                "total_fragments": 1252,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinobacter algicola",
                "strain": "strain=DG893",
                "accession": "GCA_000170835.1",
                "taxid": 236100,
                "species_taxid": 236100,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.455,
                "matched_fragments": 700,
                "total_fragments": 1252,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinobacter goseongensis",
                "strain": "strain=KCTC 12515",
                "accession": "GCA_023156235.1",
                "taxid": 453838,
                "species_taxid": 453838,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6537,
                "matched_fragments": 542,
                "total_fragments": 1252,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinobacter arenosus",
                "strain": "strain=CAU 1620",
                "accession": "GCA_019264345.1",
                "taxid": 2856822,
                "species_taxid": 2856822,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2955,
                "matched_fragments": 534,
                "total_fragments": 1252,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinobacter similis",
                "strain": "strain=A3d10",
                "accession": "GCA_000830985.1",
                "taxid": 1420916,
                "species_taxid": 1420916,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0206,
                "matched_fragments": 468,
                "total_fragments": 1252,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinobacter koreensis",
                "strain": "strain=DSM 17924",
                "accession": "GCA_023156285.1",
                "taxid": 335974,
                "species_taxid": 335974,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9153,
                "matched_fragments": 433,
                "total_fragments": 1252,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003344045.1",
                "gtdb_species": "s__Marinobacter vulgaris",
                "ani": 100.0,
                "matched_fragments": 1251,
                "total_fragments": 1252,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_004792665.1",
                "gtdb_species": "s__Marinobacter orientalis",
                "ani": 86.4333,
                "matched_fragments": 1004,
                "total_fragments": 1252,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_005298175.1",
                "gtdb_species": "s__Marinobacter sp005298175",
                "ani": 84.5274,
                "matched_fragments": 998,
                "total_fragments": 1252,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008795955.1",
                "gtdb_species": "s__Marinobacter sp008795955",
                "ani": 83.2864,
                "matched_fragments": 919,
                "total_fragments": 1252,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000686085.1",
                "gtdb_species": "s__Marinobacter sp000686085",
                "ani": 83.0261,
                "matched_fragments": 923,
                "total_fragments": 1252,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_000831005.1",
                "gtdb_species": "s__Marinobacter salarius",
                "ani": 81.5783,
                "matched_fragments": 743,
                "total_fragments": 1252,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.84",
                "min_intra_species_ani": "96.73",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 21,
                "status": "-"
            },
            {
                "accession": "GCF_000170835.1",
                "gtdb_species": "s__Marinobacter algicola",
                "ani": 81.4585,
                "matched_fragments": 700,
                "total_fragments": 1252,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.242,
        "cell_length": 0.29,
        "doubling_h": -0.125,
        "growth_tmp": 30.29,
        "optimum_tmp": 30.084,
        "optimum_ph": 7.545,
        "genome_size": 4220111.947,
        "gc_content": 56.678,
        "coding_genes": 3548.15,
        "rRNA16S_genes": 2.444,
        "tRNA_genes": 48.833,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.96,
        "range_salinity": 1.0,
        "facultative_respiration": 0.137,
        "anaerobic_respiration": 0.034,
        "aerobic_respiration": 0.827,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.958,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.041,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Marinobacter",
        "vulgaris"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}