{ "type": "genome", "identifier": "GCF_003344865.1", "organism": "Euzebya pacifica", "title": "Euzebya pacifica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang Sci-Tech University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003344865.1", "bioproject": "PRJNA224116", "biosample": "SAMN09691332", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1608957", "species_taxid": "1608957", "organism_name": "Euzebya pacifica", "infraspecific_name": "strain=DY32-46", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/07/29", "asm_name": "ASM334486v1", "asm_submitter": "Zhejiang Sci-Tech University", "gbrs_paired_asm": "GCA_003344865.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/344/865/GCF_003344865.1_ASM334486v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6371455", "genome_size_ungapped": "6371455", "gc_percent": "70.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003344865.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "5647", "protein_coding_gene_count": "5508", "non_coding_gene_count": "89", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-07-29", "dateModified": "2018-07-29", "datePublished": "2018-07-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Euzebya pacifica" ], "sample_taxid": [ "1608957" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean" ], "sample_host_location_id": [], "data_size": "1.694 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6371455", "Number of Sequences": "2", "Longest Sequences (bp)": "5799875", "N50 (bp)": "5799875", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.6", "Number of CDSs": "5640", "Average Protein Length": "346.8", "Coding Ratio (%)": "92.1", "Number of rRNAs": "6", "Number of tRNAs": "90", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Euzebya pacifica", "strain": "strain=DY32-46", "accession": "GCA_003344865.1", "taxid": 1608957, "species_taxid": 1608957, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2122, "total_fragments": 2123, "ani_threshold": 95, "status": 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"strain=CGMCC 1.14988", "accession": "GCA_014640475.1", "taxid": 1670830, "species_taxid": 1670830, "relation_to_type": "type", "validated": true, "ani": 76.0871, "matched_fragments": 317, "total_fragments": 2123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salsipaludibacter albus", "strain": "strain=AS10", "accession": "GCA_019798055.1", "taxid": 2849650, "species_taxid": 2849650, "relation_to_type": "type", "validated": true, "ani": 76.0307, "matched_fragments": 331, "total_fragments": 2123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitriliruptor alkaliphilus", "strain": "strain=DSM 45188", "accession": "GCA_000969705.1", "taxid": 427918, "species_taxid": 427918, "relation_to_type": "type", "validated": true, "ani": 75.9139, "matched_fragments": 366, "total_fragments": 2123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Egibacter rhizosphaerae", "strain": "strain=EGI 80759", "accession": "GCA_004322855.1", "taxid": 1670831, "species_taxid": 1670831, "relation_to_type": "type", "validated": true, "ani": 75.8304, "matched_fragments": 273, "total_fragments": 2123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides gansuensis", "strain": "strain=WSJ-1", "accession": "GCA_003076135.1", "taxid": 2138300, "species_taxid": 2138300, "relation_to_type": "type", "validated": true, "ani": 75.7801, "matched_fragments": 248, "total_fragments": 2123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides luti", "strain": "strain=KIGAM211", "accession": "GCA_014212315.1", "taxid": 2761101, "species_taxid": 2761101, "relation_to_type": "type", "validated": true, "ani": 75.6401, "matched_fragments": 301, "total_fragments": 2123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Protaetiibacter intestinalis", "strain": "strain=2DFWR-13", "accession": "GCA_003627075.1", "taxid": 2419774, "species_taxid": 2419774, "relation_to_type": "type", "validated": true, "ani": 75.6066, "matched_fragments": 164, "total_fragments": 2123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mumia flava", "strain": "strain=DSM 27763", "accession": "GCA_002797495.1", "taxid": 1348852, "species_taxid": 1348852, "relation_to_type": "type", "validated": true, "ani": 75.5042, "matched_fragments": 266, "total_fragments": 2123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia abyssalis", "strain": "strain=KRD168", "accession": "GCA_019263705.2", "taxid": 2792008, "species_taxid": 2792008, "relation_to_type": "type", "validated": true, "ani": 75.5, "matched_fragments": 372, "total_fragments": 2123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium halotolerans subsp. kimchii", "strain": "strain=CBA3105", "accession": "GCA_020792675.1", "taxid": 2887346, "species_taxid": 2795215, "relation_to_type": "type", 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"matched_fragments": 274, "total_fragments": 2123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura bangladeshensis", "strain": "strain=DSM 45347", "accession": "GCA_004348335.1", "taxid": 453573, "species_taxid": 453573, "relation_to_type": "type", "validated": true, "ani": 75.3058, "matched_fragments": 343, "total_fragments": 2123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus sagamiharensis", "strain": "strain=DSM 21743", "accession": "GCA_900105785.1", "taxid": 546874, "species_taxid": 546874, "relation_to_type": "type", "validated": true, "ani": 75.2893, "matched_fragments": 296, "total_fragments": 2123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lonarensis", "strain": "strain=NCL716", "accession": "GCA_012033735.1", "taxid": 700599, "species_taxid": 700599, "relation_to_type": "type", "validated": true, "ani": 75.27, "matched_fragments": 273, "total_fragments": 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