{ "type": "genome", "identifier": "GCF_003345355.1", "organism": "Sphingomonas aracearum", "title": "Sphingomonas aracearum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Xianning Vocational Technical College", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003345355.1", "bioproject": "PRJNA224116", "biosample": "SAMN09708126", "wgs_master": "QQNB00000000.1", "refseq_category": "reference genome", "taxid": "2283317", "species_taxid": "2283317", "organism_name": "Sphingomonas aracearum", "infraspecific_name": "strain=WZY 27", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/07/30", "asm_name": "ASM334535v1", "asm_submitter": "Xianning Vocational Technical College", "gbrs_paired_asm": "GCA_003345355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/345/355/GCF_003345355.1_ASM334535v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3642894", "genome_size_ungapped": "3642894", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "14", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003345355.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3607", "protein_coding_gene_count": "3521", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-07-30", "dateModified": "2018-07-30", "datePublished": "2018-07-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingomonas aracearum" ], "sample_taxid": [ "2283317" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Jiugong Mountain" ], "sample_host_location_id": [], "data_size": "0.988 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3642894", "Number of Sequences": "14", "Longest Sequences (bp)": "1519565", "N50 (bp)": "1182423", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.3", "Number of CDSs": "3559", "Average Protein Length": "311.4", "Coding Ratio (%)": "91.3", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingomonas aracearum", "strain": "strain=WZY 27", "accession": "GCA_003345355.1", "taxid": 2283317, "species_taxid": 2283317, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1209, "total_fragments": 1209, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sphingomonas metalli", "strain": "strain=CGMCC 1.15330", "accession": "GCA_014641735.1", "taxid": 1779358, "species_taxid": 1779358, "relation_to_type": "type", "validated": true, "ani": 80.5009, "matched_fragments": 577, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas carotinifaciens", "strain": "strain=DSM 27347", "accession": "GCA_009789535.1", "taxid": 1166323, "species_taxid": 1166323, "relation_to_type": "type", "validated": true, "ani": 80.3559, "matched_fragments": 571, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas aquatilis", "strain": "strain=DSM 15581", "accession": "GCA_014196115.1", "taxid": 93063, "species_taxid": 93063, "relation_to_type": "type", "validated": true, "ani": 80.2399, "matched_fragments": 599, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas melonis", "strain": "strain=DAPP-PG 224", "accession": "GCA_000379045.1", "taxid": 152682, "species_taxid": 152682, "relation_to_type": "type", "validated": true, "ani": 80.1725, "matched_fragments": 607, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas taxi", "strain": "strain=ATCC 55669", "accession": "GCA_000764535.1", "taxid": 1549858, "species_taxid": 1549858, "relation_to_type": "type", "validated": true, "ani": 80.1503, "matched_fragments": 588, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas insulae", "strain": "strain=DSM 21792", "accession": "GCA_011762035.1", "taxid": 424800, "species_taxid": 424800, "relation_to_type": "type", "validated": true, "ani": 80.0013, "matched_fragments": 552, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas jinjuensis", "strain": "strain=YC6723", "accession": "GCA_014197105.1", "taxid": 535907, "species_taxid": 535907, "relation_to_type": "type", "validated": true, "ani": 79.9921, "matched_fragments": 559, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas insulae", "strain": "strain=KCTC 12872", "accession": "GCA_010450875.1", "taxid": 424800, "species_taxid": 424800, "relation_to_type": "type", "validated": true, "ani": 79.9836, "matched_fragments": 561, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas gellani", "strain": "strain=S6-262", "accession": "GCA_900110035.1", "taxid": 1166340, "species_taxid": 1166340, "relation_to_type": "type", "validated": true, "ani": 79.8882, "matched_fragments": 516, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas folli", "strain": "strain=RHCKR7", "accession": "GCA_019429525.1", "taxid": 2862497, "species_taxid": 2862497, "relation_to_type": "type", "validated": true, "ani": 79.7407, "matched_fragments": 602, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas palmae", "strain": "strain=JS21-1", "accession": "GCA_900109565.1", "taxid": 1855283, "species_taxid": 1855283, "relation_to_type": "type", "validated": true, "ani": 79.7263, "matched_fragments": 506, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas citri", "strain": "strain=RRHST34", "accession": "GCA_019429485.1", "taxid": 2862499, "species_taxid": 2862499, "relation_to_type": "type", "validated": true, "ani": 79.7156, "matched_fragments": 595, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas hylomeconis", "strain": "strain=CCTCC AB 2013304", "accession": "GCA_025370105.1", "taxid": 1395958, "species_taxid": 1395958, "relation_to_type": "type", "validated": true, "ani": 79.6732, "matched_fragments": 569, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas dokdonensis", "strain": "strain=DSM 21029", "accession": "GCA_002197685.1", "taxid": 344880, "species_taxid": 344880, "relation_to_type": "type", "validated": true, "ani": 79.6686, "matched_fragments": 527, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas yunnanensis", "strain": "strain=YIM 3", "accession": "GCA_019898765.1", "taxid": 310400, "species_taxid": 310400, "relation_to_type": "type", "validated": true, "ani": 79.5622, "matched_fragments": 580, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas jeddahensis", "strain": "strain=G39", "accession": "GCA_001981525.1", "taxid": 1915074, "species_taxid": 1915074, "relation_to_type": "type", "validated": true, "ani": 79.5317, "matched_fragments": 489, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas citricola", "strain": "strain=RHCKR47", "accession": "GCA_019429535.1", "taxid": 2862498, "species_taxid": 2862498, "relation_to_type": "type", "validated": true, "ani": 79.5154, "matched_fragments": 509, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas panacis", "strain": "strain=DCY99", "accession": "GCA_001717955.1", "taxid": 1560345, "species_taxid": 1560345, "relation_to_type": "type", "validated": true, "ani": 79.3795, "matched_fragments": 536, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas aurantiaca", "strain": "strain=MA101b", "accession": "GCA_003050705.1", "taxid": 185949, "species_taxid": 185949, "relation_to_type": "type", "validated": true, "ani": 79.3443, "matched_fragments": 509, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas glacialis", "strain": "strain=CGMCC 1.8957", "accession": "GCA_014653575.1", "taxid": 658225, "species_taxid": 658225, "relation_to_type": "type", "validated": true, "ani": 79.213, "matched_fragments": 547, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas mali", "strain": "strain=NBRC 15500", "accession": "GCA_001598415.1", "taxid": 40682, "species_taxid": 40682, "relation_to_type": "type", "validated": true, "ani": 78.98, "matched_fragments": 486, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas chungangi", "strain": "strain=CGMCC 1.13654", "accession": "GCA_013778325.1", "taxid": 2683589, "species_taxid": 2683589, "relation_to_type": "type", "validated": true, "ani": 78.6775, "matched_fragments": 437, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003345355.1", "gtdb_species": "s__Sphingomonas sp003345355", "ani": 100.0, "matched_fragments": 1209, "total_fragments": 1209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_014641735.1", "gtdb_species": "s__Sphingomonas metalli", "ani": 80.508, "matched_fragments": 576, "total_fragments": 1209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014196115.1", "gtdb_species": "s__Sphingomonas aquatilis", "ani": 80.2207, "matched_fragments": 601, "total_fragments": 1209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.36", "min_intra_species_ani": "95.86", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.82", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCF_013344685.1", "gtdb_species": "s__Sphingomonas sp013344685", "ani": 80.1561, "matched_fragments": 538, "total_fragments": 1209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001897375.1", "gtdb_species": "s__Sphingomonas sp001897375", "ani": 80.1132, "matched_fragments": 525, "total_fragments": 1209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.01", "min_intra_species_ani": "98.04", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_014197105.1", "gtdb_species": "s__Sphingomonas jinjuensis", "ani": 79.9996, "matched_fragments": 557, "total_fragments": 1209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010450875.1", "gtdb_species": "s__Sphingomonas insulae", "ani": 79.9832, "matched_fragments": 560, "total_fragments": 1209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900110035.1", "gtdb_species": "s__Sphingomonas gellani", "ani": 79.8655, "matched_fragments": 519, "total_fragments": 1209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004341505.2", "gtdb_species": "s__Sphingomonas sp004341505", "ani": 79.838, "matched_fragments": 527, "total_fragments": 1209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.45", "min_intra_species_ani": "95.45", "mean_intra_species_af": "0.78", "min_intra_species_af": "0.78", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_007995065.1", "gtdb_species": "s__Sphingomonas ginsenosidivorax", "ani": 79.7195, "matched_fragments": 560, "total_fragments": 1209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004345855.1", "gtdb_species": "s__Sphingomonas sp004345855", "ani": 79.7141, "matched_fragments": 606, "total_fragments": 1209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001423845.1", "gtdb_species": "s__Sphingomonas sp001423845", "ani": 79.7074, "matched_fragments": 582, "total_fragments": 1209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900109565.1", "gtdb_species": "s__Sphingomonas palmae", "ani": 79.6863, "matched_fragments": 509, "total_fragments": 1209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017418975.1", "gtdb_species": "s__Sphingomonas sp017418975", "ani": 79.6852, "matched_fragments": 569, "total_fragments": 1209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002197685.1", "gtdb_species": "s__Sphingomonas dokdonensis", "ani": 79.6672, "matched_fragments": 527, "total_fragments": 1209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014194975.1", "gtdb_species": "s__Sphingomonas sp014194975", "ani": 79.6605, "matched_fragments": 601, "total_fragments": 1209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_902498785.1", "gtdb_species": "s__Sphingomonas sp902498785", "ani": 79.6235, "matched_fragments": 508, "total_fragments": 1209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014193845.1", "gtdb_species": "s__Sphingomonas sp014193845", "ani": 79.5709, "matched_fragments": 596, "total_fragments": 1209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.90", "min_intra_species_ani": "98.90", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_019112965.1", "gtdb_species": "s__Sphingomonas excrementigallinarum", "ani": 79.5198, "matched_fragments": 489, "total_fragments": 1209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001421995.1", "gtdb_species": "s__Sphingomonas sp001421995", "ani": 79.5107, "matched_fragments": 502, "total_fragments": 1209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014204495.1", "gtdb_species": "s__Sphingomonas kyeonggiensis_A", "ani": 79.4034, "matched_fragments": 564, "total_fragments": 1209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006439055.1", "gtdb_species": "s__Sphingomonas glacialis_A", "ani": 79.2786, "matched_fragments": 559, "total_fragments": 1209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014653575.1", "gtdb_species": "s__Sphingomonas glacialis", "ani": 79.226, "matched_fragments": 545, "total_fragments": 1209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.17", "min_intra_species_ani": "97.17", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.81", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000803065.1", "gtdb_species": "s__Sphingomonas sp000803065", "ani": 78.7495, "matched_fragments": 514, "total_fragments": 1209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013778325.1", "gtdb_species": "s__Sphingomonas_N chungangi", "ani": 78.6866, "matched_fragments": 437, "total_fragments": 1209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas_N", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.288, "cell_length": 0.14, "doubling_h": null, "growth_tmp": 28.338, "optimum_tmp": 28.407, "optimum_ph": 7.016, "genome_size": 4164406.103, "gc_content": 66.116, "coding_genes": 4592.69, "rRNA16S_genes": 2.285, "tRNA_genes": 51.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.586, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.98, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.019 }, "_genome_taxon": [ "Sphingomonas", "aracearum" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }