{
    "type": "genome",
    "identifier": "GCF_003347135.1",
    "organism": "Francisella opportunistica",
    "title": "Francisella opportunistica",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Centers for Disease Control and Prevention",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003347135.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN07290514",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2016517",
        "species_taxid": "2016517",
        "organism_name": "Francisella opportunistica",
        "infraspecific_name": "strain=VA14-2155",
        "isolate": "1",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/07/31",
        "asm_name": "ASM334713v1",
        "asm_submitter": "Centers for Disease Control and Prevention",
        "gbrs_paired_asm": "GCA_003347135.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/347/135/GCF_003347135.1_ASM334713v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1839233",
        "genome_size_ungapped": "1839233",
        "gc_percent": "32.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003347135.1-RS_2024_08_24",
        "annotation_date": "2024-08-24",
        "total_gene_count": "1799",
        "protein_coding_gene_count": "1683",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-07-31",
    "dateModified": "2018-07-31",
    "datePublished": "2018-07-31",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Francisella opportunistica"
        ],
        "sample_taxid": [
            "2016517"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "opportunistic infection"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Pennsylvania"
        ],
        "sample_host_location_id": [],
        "data_size": "0.509 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 2.08,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1839233",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "1839233",
        "N50 (bp)": "1839233",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "32.5",
        "Number of CDSs": "1744",
        "Average Protein Length": "313.9",
        "Coding Ratio (%)": "89.3",
        "Number of rRNAs": "10",
        "Number of tRNAs": "38",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Francisella opportunistica",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Francisella persica",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 88.2543,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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            },
            {
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                "accession": "GCA_001885235.1",
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                "species_taxid": 622488,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "accession": "GCA_001608445.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Francisella tularensis subsp. novicida",
                "strain": "strain=U112",
                "accession": "GCA_000833375.1",
                "taxid": 264,
                "species_taxid": 263,
                "relation_to_type": "type",
                "validated": true,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Francisella tularensis subsp. novicida",
                "strain": "strain=U112",
                "accession": "GCA_000014645.1",
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                "species_taxid": 263,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.5718,
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                "ani_threshold": 95,
                "status": "below_threshold"
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        ],
        "cc_result": {
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            {
                "accession": "GCF_003347135.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Francisella",
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                "mean_intra_species_ani": "99.87",
                "min_intra_species_ani": "99.85",
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                "num_clustered_genomes": 4,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Francisella",
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                "num_clustered_genomes": 3,
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_001885235.1",
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                "num_clustered_genomes": 4,
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            },
            {
                "accession": "GCF_000008985.1",
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                "num_clustered_genomes": 860,
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        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": 0.5,
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    "_genome_taxon": [
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}