{ "type": "genome", "identifier": "GCF_003347595.2", "organism": "Botryobacter ruber", "title": "Botryobacter ruber", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-Sen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003347595.2", "bioproject": "PRJNA224116", "biosample": "SAMN08954525", "wgs_master": "QCZK00000000.2", "refseq_category": "reference genome", "taxid": "2171629", "species_taxid": "2171629", "organism_name": "Botryobacter ruber", "infraspecific_name": "strain=SYSU D60016", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/17", "asm_name": "ASM334759v2", "asm_submitter": "Sun Yat-Sen University", "gbrs_paired_asm": "GCA_003347595.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/347/595/GCF_003347595.2_ASM334759v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5844370", "genome_size_ungapped": "5844370", "gc_percent": "50.000000", "replicon_count": "0", "scaffold_count": "62", "contig_count": "62", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003347595.2-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4534", "protein_coding_gene_count": "4471", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-17", "dateModified": "2019-01-17", "datePublished": "2019-01-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Botryobacter ruber" ], "sample_taxid": [ "2171629" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], 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"GCA_001907195.1", "taxid": 1797110, "species_taxid": 1797110, "relation_to_type": "type", "validated": true, "ani": 77.8553, "matched_fragments": 462, "total_fragments": 1919, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter ramchanderi", "strain": "strain=LP43", "accession": "GCA_002846395.1", "taxid": 1179743, "species_taxid": 1179743, "relation_to_type": "type", "validated": true, "ani": 77.7918, "matched_fragments": 400, "total_fragments": 1919, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter chinhatensis", "strain": "strain=LP51", "accession": "GCA_900113285.1", "taxid": 1436961, "species_taxid": 1436961, "relation_to_type": "type", "validated": true, "ani": 77.767, "matched_fragments": 424, "total_fragments": 1919, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter roseus", "strain": "strain=DSM 17521", "accession": "GCA_000373265.1", "taxid": 336989, "species_taxid": 336989, 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"spiral_cell_shape": null }, "_genome_taxon": [ "Botryobacter", "ruber" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }