{ "type": "genome", "identifier": "GCF_003350295.1", "organism": "Vibrio tetraodonis", "title": "Vibrio tetraodonis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Federal University of Rio de Janeiro", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003350295.1", "bioproject": "PRJNA224116", "biosample": "SAMN09437379", "wgs_master": "QLYY00000000.1", "refseq_category": "reference genome", "taxid": "2231647", "species_taxid": "2231647", "organism_name": "Vibrio tetraodonis", "infraspecific_name": "strain=A511", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/07/31", "asm_name": "ASM335029v1", "asm_submitter": "Federal University of Rio de Janeiro", "gbrs_paired_asm": "GCA_003350295.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/350/295/GCF_003350295.1_ASM335029v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4360861", "genome_size_ungapped": "4360861", "gc_percent": "42.500000", "replicon_count": "0", "scaffold_count": "41", "contig_count": "41", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003350295.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4028", "protein_coding_gene_count": "3847", "non_coding_gene_count": "133", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-07-31", "dateModified": "2018-07-31", "datePublished": "2018-07-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio tetraodonis" ], "sample_taxid": [ "2231647" ], "sample_host_organism": [ "Tetraodontidae" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Arraial do Cabo" ], "sample_host_location_id": [], "data_size": "1.249 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4360861", "Number of Sequences": "41", "Longest Sequences (bp)": "460678", "N50 (bp)": "183738", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.5", "Number of CDSs": "3856", "Average Protein Length": "323.5", "Coding Ratio (%)": "85.8", "Number of rRNAs": "12", "Number of tRNAs": "96", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio aquimaris", "strain": "strain=THAF100", "accession": "GCA_009363415.1", "taxid": 2587862, "species_taxid": 2587862, "relation_to_type": "type", "validated": true, "ani": 94.7887, "matched_fragments": 1257, 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"GCA_921292975.1", "taxid": 654686, "species_taxid": 654686, "relation_to_type": "type", "validated": true, "ani": 79.1865, "matched_fragments": 174, "total_fragments": 1435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio nereis", "strain": "strain=NBRC 15637", "accession": "GCA_001591105.1", "taxid": 693, "species_taxid": 693, "relation_to_type": "type", "validated": true, "ani": 79.1805, "matched_fragments": 289, "total_fragments": 1435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio marisflavi", "strain": "strain=CECT 7928", "accession": "GCA_921294215.1", "taxid": 1216040, "species_taxid": 1216040, "relation_to_type": "type", "validated": true, "ani": 79.1181, "matched_fragments": 194, "total_fragments": 1435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio marinisediminis", "strain": "strain=404", "accession": "GCA_014050145.1", "taxid": 2758441, "species_taxid": 2758441, 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