{ "type": "genome", "identifier": "GCF_003350525.1", "organism": "Nocardia mexicana", "title": "Nocardia mexicana", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003350525.1", "bioproject": "PRJNA224116", "biosample": "SAMN09074698", "wgs_master": "QQAZ00000000.1", "refseq_category": "reference genome", "taxid": "279262", "species_taxid": "279262", "organism_name": "Nocardia mexicana", "infraspecific_name": "strain=DSM 44952", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/07/31", "asm_name": "ASM335052v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003350525.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/350/525/GCF_003350525.1_ASM335052v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8981212", "genome_size_ungapped": "8981017", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "41", "contig_count": "41", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003350525.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "8194", "protein_coding_gene_count": "8061", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-07-31", "dateModified": "2018-07-31", "datePublished": "2018-07-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardia mexicana" ], "sample_taxid": [ "279262" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.444 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 10.65, "strain_heterogeneity": 28.57, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8981212", "Number of Sequences": "41", "Longest Sequences (bp)": "1104969", "N50 (bp)": "665151", "Gap Ratio (%)": "0.002171", "GCcontent (%)": "68.7", "Number of CDSs": "8282", "Average Protein Length": "321.0", "Coding Ratio (%)": "88.8", "Number of rRNAs": "4", "Number of tRNAs": "67", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardia mexicana", "strain": "strain=DSM 44952", "accession": "GCA_003350525.1", "taxid": 279262, "species_taxid": 279262, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2972, "total_fragments": 2972, "ani_threshold": 95, 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terpenica", "strain": "strain=IFM 0706", "accession": "GCA_013186535.1", "taxid": 455432, "species_taxid": 455432, "relation_to_type": "type", "validated": true, "ani": 82.9017, "matched_fragments": 1467, "total_fragments": 2972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia albiluteola", "strain": "strain=NEAU-G5", "accession": "GCA_018860155.1", "taxid": 2842303, "species_taxid": 2842303, "relation_to_type": "type", "validated": true, "ani": 81.7175, "matched_fragments": 1392, "total_fragments": 2972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia mikamii", "strain": "strain=NBRC 108933", "accession": "GCA_001613505.1", "taxid": 508464, "species_taxid": 508464, "relation_to_type": "type", "validated": true, "ani": 81.3699, "matched_fragments": 1334, "total_fragments": 2972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia aobensis", "strain": "strain=NBRC 100429", "accession": "GCA_000308375.1", "taxid": 257277, "species_taxid": 257277, "relation_to_type": "type", "validated": true, "ani": 81.3625, "matched_fragments": 1298, "total_fragments": 2972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia miyunensis", "strain": "strain=NBRC 108239", "accession": "GCA_001613065.1", "taxid": 282684, "species_taxid": 282684, "relation_to_type": "type", "validated": true, "ani": 81.174, "matched_fragments": 1366, "total_fragments": 2972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia puris", "strain": "strain=DSM 44599", "accession": "GCA_003315035.1", "taxid": 208602, "species_taxid": 208602, "relation_to_type": "type", "validated": true, "ani": 80.5533, "matched_fragments": 1212, "total_fragments": 2972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia stercoris", "strain": "strain=NEAU-LL90", "accession": "GCA_003696265.1", "taxid": 2483361, "species_taxid": 2483361, 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