{ "type": "genome", "identifier": "GCF_003350545.1", "organism": "Flavobacterium glaciei", "title": "Flavobacterium glaciei", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003350545.1", "bioproject": "PRJNA224116", "biosample": "SAMN09074696", "wgs_master": "QQBA00000000.1", "refseq_category": "reference genome", "taxid": "386300", "species_taxid": "386300", "organism_name": "Flavobacterium glaciei", "infraspecific_name": "strain=DSM 19728", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/07/31", "asm_name": "ASM335054v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003350545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/350/545/GCF_003350545.1_ASM335054v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3143612", "genome_size_ungapped": "3143327", "gc_percent": "33.500000", "replicon_count": "0", "scaffold_count": "42", "contig_count": "42", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003350545.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2770", "protein_coding_gene_count": "2691", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-07-31", "dateModified": "2018-07-31", "datePublished": "2018-07-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium glaciei" ], "sample_taxid": [ "386300" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.879 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3143612", "Number of Sequences": "42", "Longest Sequences (bp)": "410347", "N50 (bp)": "176045", "Gap Ratio (%)": "0.009066", "GCcontent (%)": "33.4", "Number of CDSs": "2693", "Average Protein Length": "336.7", "Coding Ratio (%)": "86.5", "Number of rRNAs": "2", "Number of tRNAs": "45", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium glaciei", "strain": "strain=DSM 19728", "accession": "GCA_003350545.1", "taxid": 386300, "species_taxid": 386300, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1026, "total_fragments": 1029, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium glaciei", "strain": "strain=CGMCC 1.5380", "accession": "GCA_007994155.1", "taxid": 386300, "species_taxid": 386300, "relation_to_type": "type", "validated": true, "ani": 99.9865, "matched_fragments": 1020, "total_fragments": 1029, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium petrolei", "strain": "strain=Kopri-42", "accession": "GCA_003314435.2", "taxid": 2259594, "species_taxid": 2259594, "relation_to_type": "type", "validated": true, "ani": 86.6718, "matched_fragments": 788, "total_fragments": 1029, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychrolimnae", "strain": "strain=LMG 22018", "accession": "GCA_003312425.1", "taxid": 249351, "species_taxid": 249351, "relation_to_type": "type", "validated": true, "ani": 86.4102, "matched_fragments": 808, "total_fragments": 1029, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium limicola", "strain": "strain=DSM 15094", "accession": "GCA_003634755.1", "taxid": 180441, "species_taxid": 180441, "relation_to_type": "type", "validated": true, "ani": 86.3458, "matched_fragments": 768, "total_fragments": 1029, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sinopsychrotolerans", "strain": "strain=CGMCC 1.8704", "accession": "GCA_900110375.1", "taxid": 604089, "species_taxid": 604089, "relation_to_type": "type", "validated": true, "ani": 86.179, "matched_fragments": 775, "total_fragments": 1029, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium rhamnosiphilum", "strain": "strain=LB3P52", "accession": "GCA_004349195.1", "taxid": 2541724, "species_taxid": 2541724, "relation_to_type": "type", "validated": true, "ani": 85.4943, "matched_fragments": 765, "total_fragments": 1029, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium ranwuense", "strain": "strain=LB2P22", "accession": "GCA_004349315.1", "taxid": 2541725, "species_taxid": 2541725, "relation_to_type": "type", "validated": true, "ani": 85.4434, "matched_fragments": 787, "total_fragments": 1029, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium caseinilyticum", "strain": "strain=AT-3-2", "accession": "GCA_004349085.1", "taxid": 2541732, "species_taxid": 2541732, "relation_to_type": "type", "validated": true, "ani": 85.3128, "matched_fragments": 744, "total_fragments": 1029, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium xueshanense", "strain": "strain=CGMCC 1.9227", "accession": "GCA_900112975.1", "taxid": 935223, "species_taxid": 935223, "relation_to_type": "type", "validated": true, "ani": 85.2497, "matched_fragments": 781, "total_fragments": 1029, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sandaracinum", "strain": "strain=LB-D12", "accession": "GCA_004349135.1", "taxid": 2541733, "species_taxid": 2541733, "relation_to_type": "type", "validated": true, "ani": 83.7567, "matched_fragments": 777, "total_fragments": 1029, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gawalongense", "strain": "strain=GSP16", "accession": "GCA_007097265.1", "taxid": 2594432, "species_taxid": 2594432, "relation_to_type": "type", "validated": true, "ani": 82.6666, "matched_fragments": 668, "total_fragments": 1029, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tiangeerense", "strain": "strain=CGMCC 1.6847", "accession": "GCA_007830355.1", "taxid": 459471, "species_taxid": 459471, "relation_to_type": "type", "validated": true, "ani": 81.6965, "matched_fragments": 610, "total_fragments": 1029, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium turcicum", "strain": "strain=F-339", "accession": "GCA_011365745.1", "taxid": 2764718, "species_taxid": 2764718, "relation_to_type": "type", "validated": true, "ani": 80.9483, "matched_fragments": 546, "total_fragments": 1029, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium erciyesense", "strain": "strain=F-328", "accession": "GCA_018069925.1", "taxid": 2825842, "species_taxid": 2825842, "relation_to_type": "type", "validated": true, "ani": 80.7868, "matched_fragments": 557, "total_fragments": 1029, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium taihuense", "strain": "strain=NAS39", "accession": "GCA_019351435.1", "taxid": 2857508, "species_taxid": 2857508, "relation_to_type": "type", "validated": true, "ani": 79.2594, "matched_fragments": 431, "total_fragments": 1029, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 78.6634, "matched_fragments": 380, "total_fragments": 1029, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 78.3583, "matched_fragments": 390, "total_fragments": 1029, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium litorale", "strain": "strain=WSW3-B6", "accession": "GCA_019613795.1", "taxid": 2856519, "species_taxid": 2856519, "relation_to_type": "type", "validated": true, "ani": 76.668, "matched_fragments": 74, "total_fragments": 1029, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Joostella atrarenae", "strain": "strain=M1-2", "accession": "GCA_021764745.1", "taxid": 679257, "species_taxid": 679257, "relation_to_type": "type", "validated": true, "ani": 76.2335, "matched_fragments": 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