{ "type": "genome", "identifier": "GCF_003350585.1", "organism": "Nocardia pseudobrasiliensis", "title": "Nocardia pseudobrasiliensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003350585.1", "bioproject": "PRJNA224116", "biosample": "SAMN09074773", "wgs_master": "QQBC00000000.1", "refseq_category": "reference genome", "taxid": "45979", "species_taxid": "45979", "organism_name": "Nocardia pseudobrasiliensis", "infraspecific_name": "strain=DSM 44290", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/07/31", "asm_name": "ASM335058v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003350585.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/350/585/GCF_003350585.1_ASM335058v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8407941", "genome_size_ungapped": "8406687", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "39", "contig_count": "39", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003350585.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "8012", "protein_coding_gene_count": "7825", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-07-31", "dateModified": "2018-07-31", "datePublished": "2018-07-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardia pseudobrasiliensis" ], "sample_taxid": [ "45979" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.294 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.31, "strain_heterogeneity": 40.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8407941", "Number of Sequences": "39", "Longest Sequences (bp)": "1060465", "N50 (bp)": "570487", "Gap Ratio (%)": "0.014914", "GCcontent (%)": "67.3", "Number of CDSs": "8026", "Average Protein Length": "313.2", "Coding Ratio (%)": "89.7", "Number of rRNAs": "2", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardia pseudobrasiliensis", "strain": "strain=DSM 44290", "accession": "GCA_003350585.1", "taxid": 45979, "species_taxid": 45979, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2783, 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"below_threshold" }, { "organism_name": "Nocardia transvalensis", "strain": "strain=NBRC 15921", "accession": "GCA_000308875.1", "taxid": 37333, "species_taxid": 37333, "relation_to_type": "type", "validated": true, "ani": 81.8911, "matched_fragments": 1439, "total_fragments": 2785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia aobensis", "strain": "strain=NBRC 100429", "accession": "GCA_000308375.1", "taxid": 257277, "species_taxid": 257277, "relation_to_type": "type", "validated": true, "ani": 81.1364, "matched_fragments": 1204, "total_fragments": 2785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia mikamii", "strain": "strain=NBRC 108933", "accession": "GCA_001613505.1", "taxid": 508464, "species_taxid": 508464, "relation_to_type": "type", "validated": true, "ani": 81.0962, "matched_fragments": 1198, "total_fragments": 2785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia 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