{
    "type": "genome",
    "identifier": "GCF_003351045.1",
    "organism": "Gaiella occulta",
    "title": "Gaiella occulta",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Biocant",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003351045.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN09689339",
        "wgs_master": "QQZY00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1002870",
        "species_taxid": "1002870",
        "organism_name": "Gaiella occulta",
        "infraspecific_name": "strain=F2-233",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/07/31",
        "asm_name": "ASM335104v1",
        "asm_submitter": "Biocant",
        "gbrs_paired_asm": "GCA_003351045.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/351/045/GCF_003351045.1_ASM335104v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3028529",
        "genome_size_ungapped": "3028529",
        "gc_percent": "71.500000",
        "replicon_count": "0",
        "scaffold_count": "34",
        "contig_count": "34",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003351045.1-RS_2024_04_07",
        "annotation_date": "2024-04-07",
        "total_gene_count": "3174",
        "protein_coding_gene_count": "3094",
        "non_coding_gene_count": "54",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-07-31",
    "dateModified": "2018-07-31",
    "datePublished": "2018-07-31",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gaiella occulta"
        ],
        "sample_taxid": [
            "1002870"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Portugal:Luso"
        ],
        "sample_host_location_id": [],
        "data_size": "0.801 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3028529",
        "Number of Sequences": "34",
        "Longest Sequences (bp)": "674176",
        "N50 (bp)": "401372",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "71.6",
        "Number of CDSs": "3138",
        "Average Protein Length": "297.3",
        "Coding Ratio (%)": "92.4",
        "Number of rRNAs": "3",
        "Number of tRNAs": "56",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Gaiella occulta",
                "strain": "strain=F2-233",
                "accession": "GCA_003351045.1",
                "taxid": 1002870,
                "species_taxid": 1002870,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 994,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Capillimicrobium parvum",
                "strain": "strain=0166_1",
                "accession": "GCA_021172045.1",
                "taxid": 2884022,
                "species_taxid": 2884022,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0311,
                "matched_fragments": 347,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Miltoncostaea marina",
                "strain": "strain=SCSIO 60955",
                "accession": "GCA_018141525.1",
                "taxid": 2843215,
                "species_taxid": 2843215,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0113,
                "matched_fragments": 267,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Conexibacter arvalis",
                "strain": "strain=DSM 23288",
                "accession": "GCA_014199525.1",
                "taxid": 912552,
                "species_taxid": 912552,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9919,
                "matched_fragments": 411,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Miltoncostaea oceani",
                "strain": "strain=SCSIO 61214",
                "accession": "GCA_018141545.1",
                "taxid": 2843216,
                "species_taxid": 2843216,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8879,
                "matched_fragments": 256,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraconexibacter algicola",
                "strain": "strain=Seoho-28",
                "accession": "GCA_003044185.1",
                "taxid": 2133960,
                "species_taxid": 2133960,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8377,
                "matched_fragments": 302,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Conexibacter woesei",
                "strain": "strain=DSM 14684",
                "accession": "GCA_000025265.1",
                "taxid": 191495,
                "species_taxid": 191495,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.769,
                "matched_fragments": 401,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Solirubrobacter pauli",
                "strain": "strain=DSM 14954",
                "accession": "GCA_003633755.1",
                "taxid": 166793,
                "species_taxid": 166793,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.759,
                "matched_fragments": 332,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Patulibacter minatonensis",
                "strain": "strain=DSM 18081",
                "accession": "GCA_000519325.1",
                "taxid": 298163,
                "species_taxid": 298163,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6769,
                "matched_fragments": 290,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aeromicrobium terrae",
                "strain": "strain=CC-CFT486",
                "accession": "GCA_008039565.1",
                "taxid": 2498846,
                "species_taxid": 2498846,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.458,
                "matched_fragments": 150,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blastococcus xanthinilyticus",
                "strain": "strain=DSM 46842",
                "accession": "GCA_008124835.1",
                "taxid": 1564164,
                "species_taxid": 1564164,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.2957,
                "matched_fragments": 176,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudonocardia sulfidoxydans",
                "strain": "strain=NBRC 16205",
                "accession": "GCA_007989085.1",
                "taxid": 54011,
                "species_taxid": 54011,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.2373,
                "matched_fragments": 247,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas lumbrici",
                "strain": "strain=1.1416",
                "accession": "GCA_006476065.1",
                "taxid": 2559601,
                "species_taxid": 2559601,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.1821,
                "matched_fragments": 94,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium jeotgali",
                "strain": "strain=LMG 23639",
                "accession": "GCA_022179345.1",
                "taxid": 381630,
                "species_taxid": 381630,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.1417,
                "matched_fragments": 150,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura latina",
                "strain": "strain=ATCC BAA-277",
                "accession": "GCA_012396395.1",
                "taxid": 163603,
                "species_taxid": 163603,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.1407,
                "matched_fragments": 240,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura latina",
                "strain": "strain=NBRC 106108",
                "accession": "GCA_001552195.1",
                "taxid": 163603,
                "species_taxid": 163603,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.1224,
                "matched_fragments": 237,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudonocardia kunmingensis",
                "strain": "strain=DSM 45301",
                "accession": "GCA_006716445.1",
                "taxid": 630975,
                "species_taxid": 630975,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.1055,
                "matched_fragments": 311,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Asanoa ferruginea",
                "strain": "strain=DSM 44099",
                "accession": "GCA_003387075.1",
                "taxid": 53367,
                "species_taxid": 53367,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0423,
                "matched_fragments": 220,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium mesophilicum",
                "strain": "strain=NBRC 15688",
                "accession": "GCA_022179445.1",
                "taxid": 39956,
                "species_taxid": 39956,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0053,
                "matched_fragments": 121,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Asanoa ferruginea",
                "strain": "strain=NBRC 14496",
                "accession": "GCA_016862495.1",
                "taxid": 53367,
                "species_taxid": 53367,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0045,
                "matched_fragments": 217,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003351045.1",
                "gtdb_species": "s__Gaiella occulta",
                "ani": 100.0,
                "matched_fragments": 994,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__Gaiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_016870235.1",
                "gtdb_species": "s__Gaiella sp016870235",
                "ani": 79.7282,
                "matched_fragments": 339,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__Gaiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009694305.1",
                "gtdb_species": "s__Gaiella sp009694305",
                "ani": 79.4915,
                "matched_fragments": 356,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__Gaiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004366385.1",
                "gtdb_species": "s__GMQP-bins7 sp004366385",
                "ani": 78.9587,
                "matched_fragments": 384,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__GMQP-bins7",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013694685.1",
                "gtdb_species": "s__Gaiella sp013694685",
                "ani": 78.8482,
                "matched_fragments": 295,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__Gaiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_005884575.1",
                "gtdb_species": "s__AC-16 sp005884575",
                "ani": 78.2962,
                "matched_fragments": 418,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__AC-16",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003134505.1",
                "gtdb_species": "s__PALSA-612 sp003134505",
                "ani": 78.2403,
                "matched_fragments": 327,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__PALSA-612",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019236545.1",
                "gtdb_species": "s__Palsa-739 sp019236545",
                "ani": 78.2269,
                "matched_fragments": 327,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__Palsa-739",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.19",
                "min_intra_species_ani": "98.19",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_013696185.1",
                "gtdb_species": "s__JACCZA01 sp013696185",
                "ani": 78.1936,
                "matched_fragments": 289,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__JACCZA01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003139545.1",
                "gtdb_species": "s__Palsa-739 sp003139545",
                "ani": 78.0885,
                "matched_fragments": 349,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__Palsa-739",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903930195.1",
                "gtdb_species": "s__PALSA-600 sp903930195",
                "ani": 77.9641,
                "matched_fragments": 224,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__PALSA-600",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_005884155.1",
                "gtdb_species": "s__AC-32 sp005884155",
                "ani": 77.9398,
                "matched_fragments": 233,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__AC-32",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013812465.1",
                "gtdb_species": "s__GMQP-bins7 sp013812465",
                "ani": 77.7056,
                "matched_fragments": 207,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__GMQP-bins7",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016844515.1",
                "gtdb_species": "s__GMQP-bins7 sp016844515",
                "ani": 77.6376,
                "matched_fragments": 271,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__GMQP-bins7",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_005885125.1",
                "gtdb_species": "s__AC-21 sp005885125",
                "ani": 77.4366,
                "matched_fragments": 262,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__AC-21",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Gaiella",
        "occulta"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}