{ "type": "genome", "identifier": "GCF_003352185.1", "organism": "Pseudomonas kribbensis", "title": "Pseudomonas kribbensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Research Institute of Bioscience and Biotechnology (KRIBB)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003352185.1", "bioproject": "PRJNA224116", "biosample": "SAMN09244908", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1628086", "species_taxid": "1628086", "organism_name": "Pseudomonas kribbensis", "infraspecific_name": "strain=46-2", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "ASM335218v1", "asm_submitter": "Korea Research Institute of Bioscience and Biotechnology (KRIBB)", "gbrs_paired_asm": "GCA_003352185.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/352/185/GCF_003352185.1_ASM335218v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6324282", "genome_size_ungapped": "6324282", "gc_percent": "60.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003352185.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "5786", "protein_coding_gene_count": "5646", "non_coding_gene_count": "97", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas kribbensis" ], "sample_taxid": [ "1628086" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Daejeon" ], "sample_host_location_id": [], "data_size": "1.761 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6324282", "Number of Sequences": "1", "Longest Sequences (bp)": "6324282", "N50 (bp)": "6324282", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.5", "Number of CDSs": "5681", "Average Protein Length": "333.2", "Coding Ratio (%)": "89.8", "Number of rRNAs": "19", "Number of tRNAs": "75", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas kribbensis", "strain": "strain=46-2", "accession": "GCA_003352185.1", "taxid": 1628086, "species_taxid": 1628086, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2104, "total_fragments": 2108, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas allokribbensis", "strain": "strain=IzPS23", "accession": "GCA_014863605.1", "taxid": 2774460, "species_taxid": 2774460, "relation_to_type": "type", "validated": true, "ani": 93.4285, "matched_fragments": 1896, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas bananamidigenes", "strain": "strain=BW11P2", "accession": "GCA_001679645.1", "taxid": 2843610, "species_taxid": 2843610, "relation_to_type": "type", "validated": true, "ani": 92.1849, "matched_fragments": 1739, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pharyngis", "strain": "strain=BML-PP036", "accession": "GCA_021602345.1", "taxid": 2892333, "species_taxid": 2892333, "relation_to_type": "type", "validated": true, "ani": 91.4595, "matched_fragments": 1733, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sputi", "strain": "strain=BML-PP014", "accession": "GCA_021603585.1", "taxid": 2892325, "species_taxid": 2892325, "relation_to_type": "type", "validated": true, "ani": 91.3319, "matched_fragments": 1675, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas koreensis", "strain": "strain=DSM 16610", "accession": "GCA_012986595.1", "taxid": 198620, "species_taxid": 198620, "relation_to_type": "suspected-type", "validated": true, "ani": 88.8817, "matched_fragments": 1668, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas koreensis", "strain": "strain=JCM 14769", "accession": "GCA_014646955.1", "taxid": 198620, "species_taxid": 198620, "relation_to_type": "suspected-type", "validated": true, "ani": 88.8369, "matched_fragments": 1680, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas koreensis", "strain": "strain=CCUG 51519", "accession": "GCA_008801535.1", "taxid": 198620, "species_taxid": 198620, "relation_to_type": "suspected-type", "validated": true, "ani": 88.8206, "matched_fragments": 1671, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas monsensis", "strain": "strain=PGSB 8459", "accession": "GCA_014268495.2", "taxid": 2745509, "species_taxid": 2745509, "relation_to_type": "type", "validated": true, "ani": 88.4, "matched_fragments": 1686, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas zeae", "strain": "strain=OE 48.2", "accession": "GCA_014268485.2", "taxid": 2745510, "species_taxid": 2745510, "relation_to_type": "type", "validated": true, "ani": 88.0779, "matched_fragments": 1689, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas neuropathica", "strain": "strain=P155", "accession": "GCA_015461835.1", "taxid": 2730425, "species_taxid": 2730425, "relation_to_type": "type", "validated": true, "ani": 87.9576, "matched_fragments": 1685, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas germanica", "strain": "strain=FIT28", "accession": "GCA_019614655.1", "taxid": 2815720, "species_taxid": 2815720, "relation_to_type": "type", "validated": true, "ani": 87.9259, "matched_fragments": 1685, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas granadensis", "strain": "strain=LMG 27940", "accession": "GCA_900105485.1", "taxid": 1421430, "species_taxid": 1421430, "relation_to_type": "suspected-type", "validated": true, "ani": 87.3106, "matched_fragments": 1587, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas azerbaijanoriens", "strain": "strain=SWRI123", "accession": "GCA_019139795.1", "taxid": 2842350, "species_taxid": 2842350, "relation_to_type": "type", "validated": true, "ani": 86.4503, "matched_fragments": 1433, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pergaminensis", "strain": "strain=1008", "accession": "GCA_024112395.1", "taxid": 2853159, "species_taxid": 2853159, "relation_to_type": "type", "validated": true, "ani": 83.6472, "matched_fragments": 1325, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lurida", "strain": "strain=LMG 21995", "accession": "GCA_002563895.1", "taxid": 244566, "species_taxid": 244566, "relation_to_type": "type", "validated": true, "ani": 83.581, "matched_fragments": 1295, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, 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