{ "type": "genome", "identifier": "GCF_003355495.1", "organism": "Crenobacter cavernae", "title": "Crenobacter cavernae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003355495.1", "bioproject": "PRJNA224116", "biosample": "SAMN09726256", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2290923", "species_taxid": "2290923", "organism_name": "Crenobacter cavernae", "infraspecific_name": "strain=K1W11S-77", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/06", "asm_name": "ASM335549v1", "asm_submitter": "Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_003355495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/355/495/GCF_003355495.1_ASM335549v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3271767", "genome_size_ungapped": "3271667", "gc_percent": "65.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003355495.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "3208", "protein_coding_gene_count": "3063", "non_coding_gene_count": "105", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-06", "dateModified": "2018-08-06", "datePublished": "2018-08-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Crenobacter cavernae" ], "sample_taxid": [ "2290923" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guizhou" ], "sample_host_location_id": [], "data_size": "0.893 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3271667", "Number of Sequences": "1", "Longest Sequences (bp)": "3271667", "N50 (bp)": "3271667", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.3", "Number of CDSs": "3109", "Average Protein Length": "308.1", "Coding Ratio (%)": "87.8", "Number of rRNAs": "21", "Number of tRNAs": "84", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Crenobacter cavernae", "strain": "strain=K1W11S-77", "accession": "GCA_003355495.1", "taxid": 2290923, "species_taxid": 2290923, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1084, "total_fragments": 1090, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Crenobacter luteus", "strain": "strain=DSM 27258", "accession": "GCA_004345725.1", "taxid": 1452487, "species_taxid": 1452487, "relation_to_type": "type", "validated": true, "ani": 88.5079, "matched_fragments": 740, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crenobacter sedimenti", "strain": "strain=HX-7-9", "accession": "GCA_010435965.1", "taxid": 2705474, "species_taxid": 2705474, "relation_to_type": "type", "validated": true, "ani": 81.6882, "matched_fragments": 548, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crenobacter intestini", "strain": "strain=GY 70310", "accession": "GCA_004919095.1", "taxid": 2563443, "species_taxid": 2563443, "relation_to_type": "type", "validated": true, "ani": 81.668, "matched_fragments": 532, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium violaceum", "strain": "strain=ATCC 12472", "accession": "GCA_000007705.1", "taxid": 536, "species_taxid": 536, "relation_to_type": "type", "validated": true, "ani": 80.9272, "matched_fragments": 543, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vogesella alkaliphila", "strain": "strain=KCTC 32041", "accession": "GCA_014652475.1", "taxid": 1193621, "species_taxid": 1193621, "relation_to_type": "type", "validated": true, "ani": 80.8896, "matched_fragments": 551, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium violaceum", "strain": "strain=NCTC9757", "accession": "GCA_900446805.1", "taxid": 536, "species_taxid": 536, "relation_to_type": "type", "validated": true, "ani": 80.7735, "matched_fragments": 547, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vogesella fluminis", "strain": "strain=KCTC 23713", "accession": "GCA_014652335.1", "taxid": 1069161, "species_taxid": 1069161, "relation_to_type": "type", "validated": true, "ani": 80.4908, "matched_fragments": 513, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium sphagni", "strain": "strain=IIBBL 14B-1", "accession": "GCA_001855555.1", "taxid": 1903179, "species_taxid": 1903179, "relation_to_type": "type", "validated": true, "ani": 80.4088, "matched_fragments": 471, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium piscinae", "strain": "strain=DSM 23278", "accession": "GCA_021129175.1", "taxid": 686831, "species_taxid": 686831, "relation_to_type": "type", "validated": true, "ani": 80.2581, "matched_fragments": 498, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium sinusclupearum", "strain": "strain=MWU13-2610", "accession": "GCA_002902845.1", 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