{ "type": "genome", "identifier": "GCF_003362725.1", "organism": "Winogradskyella aurantiaca", "title": "Winogradskyella aurantiaca", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Inha University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003362725.1", "bioproject": "PRJNA224116", "biosample": "SAMN09389153", "wgs_master": "QKTV00000000.1", "refseq_category": "reference genome", "taxid": "2219558", "species_taxid": "2219558", "organism_name": "Winogradskyella aurantiaca", "infraspecific_name": "strain=IMCC20180", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/06", "asm_name": "ASM336272v1", "asm_submitter": "Inha University", "gbrs_paired_asm": "GCA_003362725.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/362/725/GCF_003362725.1_ASM336272v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3102160", "genome_size_ungapped": "3102160", "gc_percent": "37.500000", "replicon_count": "0", "scaffold_count": "25", "contig_count": "25", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003362725.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2828", "protein_coding_gene_count": "2774", "non_coding_gene_count": "44", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-06", "dateModified": "2018-08-06", "datePublished": "2018-08-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Winogradskyella aurantiaca" ], "sample_taxid": [ "2219558" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Yeongdeok" ], "sample_host_location_id": [], "data_size": "0.881 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3102160", "Number of Sequences": "25", "Longest Sequences (bp)": "916346", "N50 (bp)": "350571", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.7", "Number of CDSs": "2722", "Average Protein Length": "343.0", "Coding Ratio (%)": "90.3", "Number of rRNAs": "3", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Winogradskyella aurantiaca", "strain": "strain=IMCC20180", "accession": "GCA_003362725.1", "taxid": 2219558, "species_taxid": 2219558, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1023, "total_fragments": 1024, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Winogradskyella algicola", "strain": "strain=IMCC33238", "accession": "GCA_005869935.1", "taxid": 2575815, "species_taxid": 2575815, "relation_to_type": "type", "validated": true, "ani": 77.4067, "matched_fragments": 128, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella tangerina", "strain": "strain=M1309", "accession": "GCA_003260205.1", "taxid": 2023240, "species_taxid": 2023240, "relation_to_type": "type", "validated": true, "ani": 77.2287, "matched_fragments": 148, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella ursingii", "strain": "strain=HL4150", "accession": "GCA_013403975.1", "taxid": 2686079, "species_taxid": 2686079, "relation_to_type": "type", "validated": true, "ani": 77.0979, "matched_fragments": 106, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=RU-4-M-4", "accession": "GCA_007559325.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 77.0872, "matched_fragments": 102, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=DSM 29199", "accession": "GCA_014202225.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 77.0653, "matched_fragments": 101, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter aestuarii", "strain": "strain=KCTC 23449", "accession": "GCA_006148925.1", "taxid": 912802, "species_taxid": 912802, "relation_to_type": "type", "validated": true, "ani": 77.0502, "matched_fragments": 88, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera ponticola", "strain": "strain=MM-14", "accession": "GCA_012931685.1", "taxid": 2042995, "species_taxid": 2042995, "relation_to_type": "type", "validated": true, "ani": 77.0292, "matched_fragments": 126, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella sediminis", "strain": "strain=DSM 28134", "accession": "GCA_003387355.1", "taxid": 1382466, "species_taxid": 1382466, "relation_to_type": "type", "validated": true, "ani": 77.0056, "matched_fragments": 139, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella flava", "strain": "strain=T58", "accession": "GCA_004310325.1", "taxid": 2527939, "species_taxid": 2527939, "relation_to_type": "type", "validated": true, "ani": 76.9986, "matched_fragments": 92, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella aurantia", "strain": "strain=WNB302", "accession": "GCA_002266855.1", "taxid": 1915063, "species_taxid": 1915063, "relation_to_type": "type", "validated": true, "ani": 76.978, "matched_fragments": 122, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella endarachnes", "strain": "strain=HL2-2", "accession": "GCA_009741275.1", "taxid": 2681965, "species_taxid": 2681965, "relation_to_type": "type", "validated": true, "ani": 76.9747, "matched_fragments": 131, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella echinorum", "strain": "strain=KCTC 22026", "accession": "GCA_014284085.1", "taxid": 538189, "species_taxid": 538189, "relation_to_type": "type", "validated": true, "ani": 76.9485, "matched_fragments": 153, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella echinorum", "strain": "strain=KCTC 22026", "accession": "GCA_014297365.1", "taxid": 538189, "species_taxid": 538189, "relation_to_type": "type", "validated": true, "ani": 76.9485, "matched_fragments": 153, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella costae", "strain": "strain=Z3138", "accession": "GCA_013403865.1", "taxid": 2697008, "species_taxid": 2697008, "relation_to_type": "type", "validated": true, "ani": 76.9429, "matched_fragments": 100, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pectinivorans", "strain": "strain=DSM 25730", "accession": "GCA_900112595.1", "taxid": 870482, "species_taxid": 870482, "relation_to_type": "type", "validated": true, "ani": 76.9275, "matched_fragments": 93, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella eckloniae", "strain": "strain=EC29", "accession": "GCA_013249045.1", "taxid": 1089306, "species_taxid": 1089306, "relation_to_type": "type", "validated": true, "ani": 76.9051, "matched_fragments": 123, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens mesophilus", "strain": "strain=JCM 13413", "accession": "GCA_000826645.1", "taxid": 325473, "species_taxid": 325473, "relation_to_type": "type", "validated": true, "ani": 76.8686, "matched_fragments": 109, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yeosuana aromativorans", "strain": "strain=JCM 12862", "accession": "GCA_014646655.1", "taxid": 288019, "species_taxid": 288019, "relation_to_type": "type", "validated": true, "ani": 76.8402, "matched_fragments": 98, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella helgolandensis", "strain": "strain=Z963", "accession": "GCA_013404085.1", "taxid": 2697010, "species_taxid": 2697010, "relation_to_type": "type", "validated": true, "ani": 76.7891, "matched_fragments": 132, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Snuella sedimenti", "strain": "strain=CAU 1569", "accession": "GCA_016428595.1", "taxid": 2798802, "species_taxid": 2798802, "relation_to_type": "type", "validated": true, "ani": 76.7849, "matched_fragments": 88, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera flava", "strain": "strain=NBU2984", "accession": "GCA_023634025.1", "taxid": 2930218, "species_taxid": 2930218, "relation_to_type": "type", "validated": true, "ani": 76.7477, "matched_fragments": 101, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella forsetii", "strain": "strain=HL857", "accession": "GCA_013394595.1", "taxid": 2686077, "species_taxid": 2686077, "relation_to_type": "type", "validated": true, "ani": 76.7017, "matched_fragments": 131, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter septentrionalilitoris", "strain": "strain=ANORD1", "accession": "GCA_009832745.1", "taxid": 2494657, "species_taxid": 2494657, "relation_to_type": "type", "validated": true, "ani": 76.6645, "matched_fragments": 53, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella thalassocola", "strain": "strain=DSM 15363", "accession": "GCA_900099995.1", "taxid": 262004, "species_taxid": 262004, "relation_to_type": "type", "validated": true, "ani": 76.6429, "matched_fragments": 142, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bizionia paragorgiae", "strain": "strain=DSM 23842", "accession": "GCA_900107625.1", "taxid": 283786, "species_taxid": 283786, "relation_to_type": "type", "validated": true, "ani": 76.5778, "matched_fragments": 74, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum todarodis", "strain": "strain=LPB0136", "accession": "GCA_001889045.1", "taxid": 1850252, "species_taxid": 1850252, "relation_to_type": "type", "validated": true, "ani": 75.9315, "matched_fragments": 50, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003362725.1", "gtdb_species": "s__Winogradskyella aurantiaca", "ani": 100.0, "matched_fragments": 1023, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003335675.1", "gtdb_species": "s__Winogradskyella sp003335675", "ani": 77.7075, "matched_fragments": 125, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008806375.1", "gtdb_species": "s__Tamlana_A haliotis", "ani": 77.3832, "matched_fragments": 67, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tamlana_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003260205.1", "gtdb_species": "s__Winogradskyella tangerina", "ani": 77.2287, "matched_fragments": 148, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018860565.1", "gtdb_species": "s__Winogradskyella psychrotolerans_B", "ani": 77.2024, "matched_fragments": 130, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017581965.1", "gtdb_species": "s__Winogradskyella sp017581965", "ani": 77.1997, "matched_fragments": 125, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003386165.1", "gtdb_species": "s__Winogradskyella eximia", "ani": 77.1774, "matched_fragments": 126, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000828715.1", "gtdb_species": "s__Winogradskyella sp000828715", "ani": 77.1304, "matched_fragments": 160, "total_fragments": 1024, "gtdb_taxonomy": 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