{ "type": "genome", "identifier": "GCF_003362755.1", "organism": "Marinomonas piezotolerans", "title": "Marinomonas piezotolerans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Third Institute of Oceanography, State of Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003362755.1", "bioproject": "PRJNA224116", "biosample": "SAMN09377739", "wgs_master": "QKRA00000000.1", "refseq_category": "reference genome", "taxid": "2213058", "species_taxid": "2213058", "organism_name": "Marinomonas piezotolerans", "infraspecific_name": "strain=YLB-05", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/03", "asm_name": "ASM336275v1", "asm_submitter": "Third Institute of Oceanography, State of Oceanic Administration", "gbrs_paired_asm": "GCA_003362755.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/362/755/GCF_003362755.1_ASM336275v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3996314", "genome_size_ungapped": "3996314", "gc_percent": "45.500000", "replicon_count": "0", "scaffold_count": "29", "contig_count": "29", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003362755.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "3788", "protein_coding_gene_count": "3685", "non_coding_gene_count": "86", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-03", "dateModified": "2018-08-03", "datePublished": "2018-08-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinomonas piezotolerans" ], "sample_taxid": [ "2213058" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean" ], "sample_host_location_id": [], "data_size": "1.147 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3996314", "Number of Sequences": "29", "Longest Sequences (bp)": "859638", "N50 (bp)": "567345", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.7", "Number of CDSs": "3716", "Average Protein Length": "323.2", "Coding Ratio (%)": "90.2", "Number of rRNAs": "10", "Number of tRNAs": "69", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinomonas piezotolerans", "strain": "strain=YLB-05", "accession": "GCA_003362755.1", "taxid": 2213058, "species_taxid": 2213058, 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"organism_name": "Marinomonas lutimaris", "strain": "strain=E165", "accession": "GCA_019426345.1", "taxid": 2846746, "species_taxid": 2846746, "relation_to_type": "type", "validated": true, "ani": 78.4243, "matched_fragments": 163, "total_fragments": 1318, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinomonas profundi", "strain": "strain=M1K-6", "accession": "GCA_012584435.1", "taxid": 2726122, "species_taxid": 2726122, "relation_to_type": "type", "validated": true, "ani": 78.3938, "matched_fragments": 160, "total_fragments": 1318, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinomonas rhizomae", "strain": "strain=CECT 7377", "accession": "GCA_003315485.1", "taxid": 491948, "species_taxid": 491948, "relation_to_type": "type", "validated": true, "ani": 78.1704, "matched_fragments": 174, "total_fragments": 1318, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinomonas rhizomae", "strain": 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