{ "type": "genome", "identifier": "GCF_003363485.1", "organism": "Marinobacter flavimaris", "title": "Marinobacter flavimaris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chunlab", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003363485.1", "bioproject": "PRJNA224116", "biosample": "SAMN09748093", "wgs_master": "QRDH00000000.1", "refseq_category": "na", "taxid": "262076", "species_taxid": "262076", "organism_name": "Marinobacter flavimaris", "infraspecific_name": "strain=KCTC 12185", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/06", "asm_name": "ASM336348v1", "asm_submitter": "Chunlab", "gbrs_paired_asm": "GCA_003363485.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/363/485/GCF_003363485.1_ASM336348v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4462136", "genome_size_ungapped": "4462136", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "41", "contig_count": "41", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003363485.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "4134", "protein_coding_gene_count": "4040", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-06", "dateModified": "2018-08-06", "datePublished": "2018-08-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacter flavimaris" ], "sample_taxid": [ "262076" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.268 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4462136", "Number of Sequences": "41", "Longest Sequences (bp)": "1011657", "N50 (bp)": "425567", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.1", "Number of CDSs": "4117", "Average Protein Length": "326.5", "Coding Ratio (%)": "90.4", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter flavimaris", "strain": "strain=KCTC 12185", "accession": "GCA_003363485.1", "taxid": 262076, "species_taxid": 262076, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1469, "total_fragments": 1471, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Marinobacter flavimaris", "strain": "strain=LMG 23834", "accession": "GCA_002933295.1", "taxid": 262076, "species_taxid": 262076, "relation_to_type": "type", "validated": true, "ani": 99.9868, "matched_fragments": 1463, "total_fragments": 1471, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Marinobacter adhaerens", "strain": "strain=HP15", "accession": "GCA_000166295.1", "taxid": 1033846, "species_taxid": 1033846, "relation_to_type": "type", "validated": true, "ani": 96.5554, "matched_fragments": 1200, "total_fragments": 1471, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Marinobacter maroccanus", "strain": "strain=N4", "accession": "GCA_002933275.1", "taxid": 2055143, "species_taxid": 2055143, "relation_to_type": "type", "validated": true, "ani": 88.4155, "matched_fragments": 1161, "total_fragments": 1471, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter guineae", "strain": "strain=M3B", "accession": "GCA_002744735.1", "taxid": 432303, "species_taxid": 432303, "relation_to_type": "type", "validated": true, "ani": 83.0182, "matched_fragments": 984, "total_fragments": 1471, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter subterrani", "strain": "strain=JG233", "accession": "GCA_001045555.1", "taxid": 1658765, "species_taxid": 1658765, "relation_to_type": "type", "validated": true, "ani": 82.9386, "matched_fragments": 930, "total_fragments": 1471, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter gudaonensis", "strain": "strain=CGMCC 1.6294", "accession": "GCA_900115175.1", "taxid": 375760, "species_taxid": 375760, "relation_to_type": "type", "validated": true, "ani": 82.0021, "matched_fragments": 844, "total_fragments": 1471, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter goseongensis", "strain": "strain=KCTC 12515", "accession": "GCA_023156235.1", "taxid": 453838, 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.38", "min_intra_species_ani": "96.64", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.80", "num_clustered_genomes": 12, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.125, "cell_length": 0.352, "doubling_h": -0.125, "growth_tmp": 30.0, "optimum_tmp": 37.0, "optimum_ph": 7.5, "genome_size": 4220111.947, "gc_content": 56.678, "coding_genes": 3548.15, "rRNA16S_genes": 2.444, "tRNA_genes": 48.833, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 1.0, "facultative_respiration": 0.137, "anaerobic_respiration": 0.034, "aerobic_respiration": 0.827, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Marinobacter", "flavimaris" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }