{ "type": "genome", "identifier": "GCF_003364335.1", "organism": "Helicobacter anseris", "title": "Helicobacter anseris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "MIT", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003364335.1", "bioproject": "PRJNA224116", "biosample": "SAMN07710584", "wgs_master": "NXLX00000000.1", "refseq_category": "reference genome", "taxid": "375926", "species_taxid": "375926", "organism_name": "Helicobacter anseris", "infraspecific_name": "strain=MIT 04-9362", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/07", "asm_name": "ASM336433v1", "asm_submitter": "MIT", "gbrs_paired_asm": "GCA_003364335.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/364/335/GCF_003364335.1_ASM336433v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1623876", "genome_size_ungapped": "1623876", "gc_percent": "32.000000", "replicon_count": "0", "scaffold_count": "50", "contig_count": "50", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003364335.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "1630", "protein_coding_gene_count": "1566", "non_coding_gene_count": "41", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-07", "dateModified": "2018-08-07", "datePublished": "2018-08-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Helicobacter anseris" ], "sample_taxid": [ "375926" ], "sample_host_organism": [ "Branta canadensis" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.446 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1623876", "Number of Sequences": "50", "Longest Sequences (bp)": "226714", "N50 (bp)": "69460", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "32.1", "Number of CDSs": "1543", "Average Protein Length": "313.0", "Coding Ratio (%)": "89.2", "Number of rRNAs": "2", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Helicobacter anseris", "strain": "strain=MIT 04-9362", "accession": "GCA_003364335.1", "taxid": 375926, "species_taxid": 375926, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 518, "total_fragments": 520, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Helicobacter anatolicus", "strain": "strain=faydin-H8", "accession": "GCA_021300615.1", "taxid": 2905874, "species_taxid": 2905874, "relation_to_type": "type", "validated": true, "ani": 78.0358, "matched_fragments": 164, "total_fragments": 520, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter cholecystus", "strain": "strain=ATCC 700242", "accession": "GCA_003364215.1", "taxid": 45498, "species_taxid": 45498, "relation_to_type": "type", "validated": true, "ani": 77.8339, "matched_fragments": 52, "total_fragments": 520, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter kayseriensis", "strain": "strain=faydin-H23", "accession": "GCA_021300655.1", "taxid": 2905877, "species_taxid": 2905877, "relation_to_type": "type", "validated": true, "ani": 77.3583, "matched_fragments": 52, "total_fragments": 520, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter valdiviensis", 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