{
    "type": "genome",
    "identifier": "GCF_003367375.1",
    "organism": "Gallaecimonas mangrovi",
    "title": "Gallaecimonas mangrovi",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Zhejiang University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003367375.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN09742667",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2291597",
        "species_taxid": "2291597",
        "organism_name": "Gallaecimonas mangrovi",
        "infraspecific_name": "strain=HK-28",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/08/08",
        "asm_name": "ASM336737v1",
        "asm_submitter": "Zhejiang University",
        "gbrs_paired_asm": "GCA_003367375.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/367/375/GCF_003367375.1_ASM336737v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4071977",
        "genome_size_ungapped": "4071977",
        "gc_percent": "52.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-03-11",
        "total_gene_count": "3896",
        "protein_coding_gene_count": "3758",
        "non_coding_gene_count": "107",
        "pubmed_id": "29637394"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-08-08",
    "dateModified": "2018-08-08",
    "datePublished": "2018-08-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gallaecimonas mangrovi"
        ],
        "sample_taxid": [
            "2291597"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Haikou city"
        ],
        "sample_host_location_id": [],
        "data_size": "1.149 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4071977",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4071977",
        "N50 (bp)": "4071977",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "52.7",
        "Number of CDSs": "3802",
        "Average Protein Length": "320.6",
        "Coding Ratio (%)": "89.8",
        "Number of rRNAs": "18",
        "Number of tRNAs": "83",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Gallaecimonas mangrovi",
                "strain": "strain=HK-28",
                "accession": "GCA_003367375.1",
                "taxid": 2291597,
                "species_taxid": 2291597,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1357,
                "total_fragments": 1357,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Gallaecimonas pentaromativorans",
                "strain": "strain=DSM 21945",
                "accession": "GCA_003751625.1",
                "taxid": 584787,
                "species_taxid": 584787,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.477,
                "matched_fragments": 724,
                "total_fragments": 1357,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gallaecimonas xiamenensis",
                "strain": "strain=3-C-1",
                "accession": "GCA_000299915.1",
                "taxid": 1207039,
                "species_taxid": 1207039,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6948,
                "matched_fragments": 495,
                "total_fragments": 1357,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Erwinia aphidicola",
                "strain": "strain=X001",
                "accession": "GCA_024169515.1",
                "taxid": 68334,
                "species_taxid": 68334,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4737,
                "matched_fragments": 62,
                "total_fragments": 1357,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter asburiae",
                "strain": "strain=ATCC 35953",
                "accession": "GCA_001521715.1",
                "taxid": 61645,
                "species_taxid": 61645,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1688,
                "matched_fragments": 73,
                "total_fragments": 1357,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aeromonas jandaei",
                "strain": "strain=FDAARGOS_1523",
                "accession": "GCA_020341535.1",
                "taxid": 650,
                "species_taxid": 650,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1083,
                "matched_fragments": 79,
                "total_fragments": 1357,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aeromonas jandaei",
                "strain": "strain=FDAARGOS_986",
                "accession": "GCA_016127195.1",
                "taxid": 650,
                "species_taxid": 650,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0591,
                "matched_fragments": 79,
                "total_fragments": 1357,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella khirikhana",
                "strain": "strain=TH2012",
                "accession": "GCA_003957745.1",
                "taxid": 1965282,
                "species_taxid": 1965282,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7906,
                "matched_fragments": 111,
                "total_fragments": 1357,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas cavernae",
                "strain": "strain=K2W31S-8",
                "accession": "GCA_003595175.1",
                "taxid": 2320867,
                "species_taxid": 2320867,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6988,
                "matched_fragments": 51,
                "total_fragments": 1357,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter asburiae",
                "strain": "strain=FDAARGOS_892",
                "accession": "GCA_016027695.1",
                "taxid": 61645,
                "species_taxid": 61645,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6517,
                "matched_fragments": 72,
                "total_fragments": 1357,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aeromonas media",
                "strain": "strain=CECT 4232",
                "accession": "GCA_000819985.1",
                "taxid": 651,
                "species_taxid": 651,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.168,
                "matched_fragments": 62,
                "total_fragments": 1357,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella litorisediminis",
                "strain": "strain=CCUG 62411",
                "accession": "GCA_023349165.1",
                "taxid": 1173586,
                "species_taxid": 1173586,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8839,
                "matched_fragments": 83,
                "total_fragments": 1357,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aeromonas hydrophila subsp. ranae",
                "strain": "strain=CIP 107985",
                "accession": "GCA_000820325.1",
                "taxid": 208958,
                "species_taxid": 644,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8298,
                "matched_fragments": 61,
                "total_fragments": 1357,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ferrimonas aestuarii",
                "strain": "strain=IMCC35002",
                "accession": "GCA_005116665.1",
                "taxid": 2569539,
                "species_taxid": 2569539,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5637,
                "matched_fragments": 55,
                "total_fragments": 1357,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aeromonas jandaei",
                "strain": "strain=CECT 4228",
                "accession": "GCA_000819955.1",
                "taxid": 650,
                "species_taxid": 650,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4536,
                "matched_fragments": 68,
                "total_fragments": 1357,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella jiangmenensis",
                "strain": "strain=JM162201",
                "accession": "GCA_018596335.1",
                "taxid": 2837387,
                "species_taxid": 2837387,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3702,
                "matched_fragments": 92,
                "total_fragments": 1357,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ferrimonas senticii",
                "strain": "strain=DSM 18821",
                "accession": "GCA_000422665.1",
                "taxid": 394566,
                "species_taxid": 394566,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1241,
                "matched_fragments": 74,
                "total_fragments": 1357,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ferrimonas futtsuensis",
                "strain": "strain=DSM 18154",
                "accession": "GCA_000422645.1",
                "taxid": 364764,
                "species_taxid": 364764,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7888,
                "matched_fragments": 75,
                "total_fragments": 1357,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003367375.1",
                "gtdb_species": "s__Gallaecimonas mangrovi",
                "ani": 100.0,
                "matched_fragments": 1357,
                "total_fragments": 1357,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Gallaecimonadaceae;g__Gallaecimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003751625.1",
                "gtdb_species": "s__Gallaecimonas pentaromativorans",
                "ani": 80.4649,
                "matched_fragments": 726,
                "total_fragments": 1357,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Gallaecimonadaceae;g__Gallaecimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.58",
                "min_intra_species_ani": "98.58",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000299915.1",
                "gtdb_species": "s__Gallaecimonas xiamenensis",
                "ani": 79.7058,
                "matched_fragments": 495,
                "total_fragments": 1357,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Gallaecimonadaceae;g__Gallaecimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001521715.1",
                "gtdb_species": "s__Enterobacter asburiae",
                "ani": 78.3109,
                "matched_fragments": 74,
                "total_fragments": 1357,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter",
                "ani_circumscription_radius": 96.8818,
                "mean_intra_species_ani": "98.42",
                "min_intra_species_ani": "96.92",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 32,
                "status": "-"
            },
            {
                "accession": "GCF_003957745.1",
                "gtdb_species": "s__Shewanella khirikhana",
                "ani": 77.7615,
                "matched_fragments": 112,
                "total_fragments": 1357,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009765445.1",
                "gtdb_species": "s__Erwinia sp009765445",
                "ani": 77.3748,
                "matched_fragments": 58,
                "total_fragments": 1357,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Erwinia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000819985.1",
                "gtdb_species": "s__Aeromonas media",
                "ani": 77.1695,
                "matched_fragments": 63,
                "total_fragments": 1357,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.95",
                "min_intra_species_ani": "97.16",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 16,
                "status": "-"
            },
            {
                "accession": "GCF_010974825.1",
                "gtdb_species": "s__Aeromonas rivipollensis",
                "ani": 77.0711,
                "matched_fragments": 63,
                "total_fragments": 1357,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.26",
                "min_intra_species_ani": "95.18",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 15,
                "status": "-"
            },
            {
                "accession": "GCF_002936955.1",
                "gtdb_species": "s__Oceanisphaera arctica",
                "ani": 76.7949,
                "matched_fragments": 68,
                "total_fragments": 1357,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Oceanisphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001022965.1",
                "gtdb_species": "s__Enterobacter cloacae_L",
                "ani": 76.5761,
                "matched_fragments": 56,
                "total_fragments": 1357,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.51",
                "min_intra_species_ani": "97.16",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_005116665.1",
                "gtdb_species": "s__Ferrimonas sp005116665",
                "ani": 76.5272,
                "matched_fragments": 54,
                "total_fragments": 1357,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Ferrimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000819955.1",
                "gtdb_species": "s__Aeromonas jandaei",
                "ani": 76.4849,
                "matched_fragments": 67,
                "total_fragments": 1357,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas",
                "ani_circumscription_radius": 95.8323,
                "mean_intra_species_ani": "96.79",
                "min_intra_species_ani": "96.38",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 26,
                "status": "-"
            },
            {
                "accession": "GCF_018596335.1",
                "gtdb_species": "s__Shewanella sp018596335",
                "ani": 76.3151,
                "matched_fragments": 92,
                "total_fragments": 1357,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000422665.1",
                "gtdb_species": "s__Ferrimonas senticii",
                "ani": 76.1241,
                "matched_fragments": 74,
                "total_fragments": 1357,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Ferrimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000422645.1",
                "gtdb_species": "s__Ferrimonas futtsuensis",
                "ani": 75.7703,
                "matched_fragments": 76,
                "total_fragments": 1357,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Ferrimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.26,
        "cell_length": 0.498,
        "doubling_h": null,
        "growth_tmp": 29.0,
        "optimum_tmp": 28.75,
        "optimum_ph": 6.75,
        "genome_size": 4191559.5,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Gallaecimonas",
        "mangrovi"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}