{ "type": "genome", "identifier": "GCF_003367505.1", "organism": "Lysinibacillus capsici", "title": "Lysinibacillus capsici", "description": "na", "data type": "Genome sequencing and assembly", "organization": "NCAUR-ARS-USDA", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003367505.1", "bioproject": "PRJNA224116", "biosample": "SAMN08683512", "wgs_master": "PXXX00000000.1", "refseq_category": "na", "taxid": "2115968", "species_taxid": "2115968", "organism_name": "Lysinibacillus capsici", "infraspecific_name": "strain=PB300", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/08", "asm_name": "ASM336750v1", "asm_submitter": "NCAUR-ARS-USDA", "gbrs_paired_asm": "GCA_003367505.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/367/505/GCF_003367505.1_ASM336750v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4574203", "genome_size_ungapped": "4574203", "gc_percent": "37.500000", "replicon_count": "0", "scaffold_count": "46", "contig_count": "46", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003367505.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "4569", "protein_coding_gene_count": "4456", "non_coding_gene_count": "84", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-08", "dateModified": "2018-08-08", "datePublished": "2018-08-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Lysinibacillus capsici" ], "sample_taxid": [ "2115968" ], "sample_host_organism": [ "Capsicum annuum" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: southern Arizona" ], 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"status": "inconclusive" }, { "organism_name": "Lysinibacillus boronitolerans", "strain": "strain=NBRC 103108", "accession": "GCA_000772935.1", "taxid": 309788, "species_taxid": 309788, "relation_to_type": "type", "validated": true, "ani": 95.1183, "matched_fragments": 1303, "total_fragments": 1502, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Lysinibacillus boronitolerans", "strain": "strain=NBRC 103108", "accession": "GCA_002200915.1", "taxid": 309788, "species_taxid": 309788, "relation_to_type": "type", "validated": true, "ani": 95.1183, "matched_fragments": 1303, "total_fragments": 1502, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Lysinibacillus cavernae", "strain": "strain=SYSU K30005", "accession": "GCA_009724685.1", "taxid": 2666135, "species_taxid": 2666135, "relation_to_type": "type", "validated": true, "ani": 87.1093, "matched_fragments": 1219, "total_fragments": 1502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysinibacillus fusiformis", "strain": "strain=NBRC 15717", "accession": "GCA_006540205.1", "taxid": 28031, "species_taxid": 28031, "relation_to_type": "type", "validated": true, "ani": 84.9822, "matched_fragments": 1139, "total_fragments": 1502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysinibacillus macroides", "strain": "strain=DSM 54", "accession": "GCA_001281525.1", "taxid": 33935, "species_taxid": 33935, "relation_to_type": "type", "validated": true, "ani": 84.515, "matched_fragments": 942, "total_fragments": 1502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysinibacillus contaminans", "strain": "strain=DSM 25560", "accession": "GCA_001278945.1", "taxid": 1293441, "species_taxid": 1293441, "relation_to_type": "type", "validated": true, "ani": 79.8021, "matched_fragments": 507, "total_fragments": 1502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solibacillus merdavium", "strain": "strain=Sa1YVA6", "accession": "GCA_014836935.1", "taxid": 2762218, "species_taxid": 2762218, "relation_to_type": "type", "validated": true, "ani": 78.3931, "matched_fragments": 199, "total_fragments": 1502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solibacillus faecavium", "strain": "strain=A46", "accession": "GCA_014836905.1", "taxid": 2762221, "species_taxid": 2762221, "relation_to_type": "type", "validated": true, "ani": 78.3558, "matched_fragments": 198, "total_fragments": 1502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ureibacillus chungkukjangi", "strain": "strain=2RL32", "accession": "GCA_003049615.1", "taxid": 1202712, "species_taxid": 1202712, "relation_to_type": "type", "validated": true, "ani": 78.3016, "matched_fragments": 210, "total_fragments": 1502, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, 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"s__Lysinibacillus sp009724685", "ani": 87.1195, "matched_fragments": 1218, "total_fragments": 1502, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.083, "cell_length": 0.466, "doubling_h": null, "growth_tmp": 30.812, "optimum_tmp": 31.818, "optimum_ph": 7.361, "genome_size": 4462064.672, "gc_content": 38.136, "coding_genes": 4438.19, "rRNA16S_genes": 11.166, "tRNA_genes": 100.944, "gram_stain": 0.875, "sporulation": 1.0, "motility": 0.916, "range_salinity": 0.5, "facultative_respiration": 0.083, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.916, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Lysinibacillus", "capsici" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }