{ "type": "genome", "identifier": "GCF_003369575.1", "organism": "Oceanobacillus arenosus", "title": "Oceanobacillus arenosus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Center for Disease Control and Prevention", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003369575.1", "bioproject": "PRJNA224116", "biosample": "SAMN08100074", "wgs_master": "PIOC00000000.1", "refseq_category": "reference genome", "taxid": "1229153", "species_taxid": "1229153", "organism_name": "Oceanobacillus arenosus", "infraspecific_name": "strain=CAU 1183", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/10", "asm_name": "ASM336957v1", "asm_submitter": "Chinese Center for Disease Control and Prevention", "gbrs_paired_asm": "GCA_003369575.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/369/575/GCF_003369575.1_ASM336957v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4051086", "genome_size_ungapped": "4048657", "gc_percent": "37.500000", "replicon_count": "0", "scaffold_count": "35", "contig_count": "35", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003369575.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "4062", "protein_coding_gene_count": "3880", "non_coding_gene_count": "94", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-10", "dateModified": "2018-08-10", "datePublished": "2018-08-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Oceanobacillus arenosus" ], "sample_taxid": [ "1229153" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Jeju island" ], "sample_host_location_id": [], "data_size": "1.149 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4051086", "Number of Sequences": "35", "Longest Sequences (bp)": "494274", "N50 (bp)": "196941", "Gap Ratio (%)": "0.059959", "GCcontent (%)": "37.5", "Number of CDSs": "4006", "Average Protein Length": "278.0", "Coding Ratio (%)": "82.5", "Number of rRNAs": "2", "Number of tRNAs": "79", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Oceanobacillus arenosus", "strain": "strain=CAU 1183", "accession": "GCA_003369575.1", "taxid": 1229153, "species_taxid": 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"ani": 78.2444, "matched_fragments": 233, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus profundi", "strain": "strain=P3-H5", "accession": "GCA_002287375.1", "taxid": 2024555, "species_taxid": 2024555, "relation_to_type": "type", "validated": true, "ani": 77.491, "matched_fragments": 227, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinibacillus massiliensis", "strain": "strain=Marseille-P3601", "accession": "GCA_018310345.1", "taxid": 1944633, "species_taxid": 1944633, "relation_to_type": "type", "validated": true, "ani": 77.3121, "matched_fragments": 109, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinibacillus contaminans", "strain": "strain=DSM 22953", "accession": "GCA_001038425.2", "taxid": 694055, "species_taxid": 694055, "relation_to_type": "type", "validated": true, "ani": 77.2219, 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