{ "type": "genome", "identifier": "GCF_003382285.1", "organism": "Lysobacter soli", "title": "Lysobacter soli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangdong institute of Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003382285.1", "bioproject": "PRJNA224116", "biosample": "SAMN09767637", "wgs_master": "QTJR00000000.1", "refseq_category": "na", "taxid": "453783", "species_taxid": "453783", "organism_name": "Lysobacter soli", "infraspecific_name": "strain=KCTC 22011", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/12", "asm_name": "ASM338228v1", "asm_submitter": "Guangdong institute of Microbiology", "gbrs_paired_asm": "GCA_003382285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/382/285/GCF_003382285.1_ASM338228v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3953742", "genome_size_ungapped": "3953742", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "27", "contig_count": "27", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003382285.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "3628", "protein_coding_gene_count": "3529", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-12", "dateModified": "2018-08-12", "datePublished": "2018-08-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Lysobacter soli" ], "sample_taxid": [ "453783" ], "sample_host_organism": [ "soil" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.068 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3953742", "Number of Sequences": "27", "Longest Sequences (bp)": "751141", "N50 (bp)": "285382", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.7", "Number of CDSs": "3590", "Average Protein Length": "326.2", "Coding Ratio (%)": "88.9", "Number of rRNAs": "3", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lysobacter soli", "strain": "strain=KCTC 22011", "accession": "GCA_003382285.1", "taxid": 453783, "species_taxid": 453783, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1305, "total_fragments": 1305, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lysobacter panacisoli", "strain": "strain=JCM 19212", "accession": "GCA_009765165.1", "taxid": 1255263, "species_taxid": 1255263, "relation_to_type": "type", "validated": true, "ani": 85.9547, "matched_fragments": 1010, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter arenosi", "strain": "strain=R7", "accession": "GCA_016613475.2", "taxid": 2795387, "species_taxid": 2795387, "relation_to_type": "type", "validated": true, "ani": 84.2126, "matched_fragments": 902, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter prati", "strain": "strain=SYSU H10001", "accession": "GCA_009765215.1", "taxid": 2596704, "species_taxid": 2596704, "relation_to_type": "type", "validated": true, "ani": 83.7579, "matched_fragments": 920, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter niastensis", "strain": "strain=DSM 18481", "accession": "GCA_015453285.1", "taxid": 380629, "species_taxid": 380629, "relation_to_type": "type", "validated": true, "ani": 83.616, "matched_fragments": 819, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter terrestris", "strain": "strain=II4", "accession": "GCA_014489475.1", "taxid": 2865112, "species_taxid": 2865112, "relation_to_type": "type", "validated": true, "ani": 82.7058, "matched_fragments": 731, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter silvisoli", "strain": "strain=zong2l5", "accession": "GCA_003382365.1", "taxid": 2293254, "species_taxid": 2293254, "relation_to_type": "type", "validated": true, "ani": 82.4754, "matched_fragments": 795, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter enzymogenes", "strain": "strain=ATCC 29487", "accession": "GCA_900106525.1", "taxid": 69, "species_taxid": 69, "relation_to_type": "suspected-type", "validated": true, "ani": 82.0428, "matched_fragments": 802, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter arseniciresistens", "strain": "strain=ZS79", "accession": "GCA_000768335.1", "taxid": 1385522, "species_taxid": 1385522, "relation_to_type": "type", "validated": true, "ani": 81.9038, "matched_fragments": 624, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter capsici", "strain": "strain=VKM B-2533", "accession": "GCA_014779555.2", "taxid": 435897, "species_taxid": 435897, "relation_to_type": "type", "validated": true, "ani": 81.6574, "matched_fragments": 798, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter luteus", "strain": "strain=CECT 30171", "accession": "GCA_907164845.1", "taxid": 2822368, "species_taxid": 2822368, 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"min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_017308985.1", "gtdb_species": "s__Lysobacter sp017308985", "ani": 89.5371, "matched_fragments": 1119, "total_fragments": 1305, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016735495.2", "gtdb_species": "s__Lysobacter sp016735495", "ani": 87.3326, "matched_fragments": 1080, "total_fragments": 1305, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005503055.1", "gtdb_species": "s__Lysobacter sp005503055", "ani": 86.4301, "matched_fragments": 1078, "total_fragments": 1305, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009765165.1", "gtdb_species": "s__Lysobacter panacisoli", "ani": 85.93, "matched_fragments": 1013, "total_fragments": 1305, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, 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"thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Lysobacter", "soli" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }