{
    "type": "genome",
    "identifier": "GCF_003382565.3",
    "organism": "Pectobacterium aquaticum",
    "title": "Pectobacterium aquaticum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Sorbonne University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003382565.3",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN09259578",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2204145",
        "species_taxid": "2204145",
        "organism_name": "Pectobacterium aquaticum",
        "infraspecific_name": "strain=A212-S19-A16",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/11/09",
        "asm_name": "ASM338256v3",
        "asm_submitter": "Sorbonne University",
        "gbrs_paired_asm": "GCA_003382565.3",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/382/565/GCF_003382565.3_ASM338256v3",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4464425",
        "genome_size_ungapped": "4464425",
        "gc_percent": "51.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003382565.3-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "4140",
        "protein_coding_gene_count": "3893",
        "non_coding_gene_count": "106",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-11-09",
    "dateModified": "2021-11-09",
    "datePublished": "2021-11-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pectobacterium aquaticum"
        ],
        "sample_taxid": [
            "2204145"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France"
        ],
        "sample_host_location_id": [],
        "data_size": "1.262 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4464425",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4464425",
        "N50 (bp)": "4464425",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "51.2",
        "Number of CDSs": "4057",
        "Average Protein Length": "311.4",
        "Coding Ratio (%)": "84.9",
        "Number of rRNAs": "22",
        "Number of tRNAs": "76",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "strain": "strain=A212-S19-A16",
                "accession": "GCA_003382565.3",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1485,
                "total_fragments": 1488,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pectobacterium quasiaquaticum",
                "strain": "strain=A477-S1-J17",
                "accession": "GCA_014946775.2",
                "taxid": 2774015,
                "species_taxid": 2774015,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.8381,
                "matched_fragments": 1270,
                "total_fragments": 1488,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pectobacterium versatile",
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                "accession": "GCA_004296685.1",
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                "species_taxid": 2488639,
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                "ani": 94.5124,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium carotovorum subsp. carotovorum",
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                "accession": "GCA_000749855.1",
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                "species_taxid": 554,
                "relation_to_type": "suspected-type",
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                "ani": 94.1168,
                "matched_fragments": 1208,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium carotovorum subsp. carotovorum",
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                "accession": "GCA_001039055.1",
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                "species_taxid": 554,
                "relation_to_type": "suspected-type",
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                "ani": 94.1089,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium carotovorum",
                "strain": "strain=DSM 30168",
                "accession": "GCA_900129615.1",
                "taxid": 554,
                "species_taxid": 554,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.098,
                "matched_fragments": 1216,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Pectobacterium polaris",
                "strain": "strain=NIBIO1006",
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                "taxid": 2042057,
                "species_taxid": 2042057,
                "relation_to_type": "type",
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                "matched_fragments": 1203,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium odoriferum",
                "strain": "strain=NCPPB 3839",
                "accession": "GCA_000754765.1",
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                "species_taxid": 78398,
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                "ani": 93.4422,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium parvum",
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                "accession": "GCA_900195285.2",
                "taxid": 2778550,
                "species_taxid": 2778550,
                "relation_to_type": "type",
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                "ani": 93.3008,
                "matched_fragments": 1144,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium brasiliense",
                "strain": "strain=LMG 21371",
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                "species_taxid": 180957,
                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
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            },
            {
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia bockelmannii",
                "strain": "strain=S3",
                "accession": "GCA_008011855.1",
                "taxid": 2703793,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter roggenkampii",
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                "status": "below_threshold"
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            {
                "organism_name": "Enterobacter cloacae",
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                "accession": "GCF_003382565.2",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pectobacterium",
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}