{
    "type": "genome",
    "identifier": "GCF_003382685.1",
    "organism": "Halorussus litoreus",
    "title": "Halorussus litoreus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Jiangsu University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003382685.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN09463971",
        "wgs_master": "QLVG00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1710536",
        "species_taxid": "1710536",
        "organism_name": "Halorussus litoreus",
        "infraspecific_name": "strain=HD8-51",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/08/10",
        "asm_name": "ASM338268v1",
        "asm_submitter": "Jiangsu University",
        "gbrs_paired_asm": "GCA_003382685.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/382/685/GCF_003382685.1_ASM338268v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "3838315",
        "genome_size_ungapped": "3838095",
        "gc_percent": "66.000000",
        "replicon_count": "0",
        "scaffold_count": "75",
        "contig_count": "97",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003382685.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "3796",
        "protein_coding_gene_count": "3679",
        "non_coding_gene_count": "51",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-08-10",
    "dateModified": "2018-08-10",
    "datePublished": "2018-08-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Halorussus litoreus"
        ],
        "sample_taxid": [
            "1710536"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "1.054 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3838315",
        "Number of Sequences": "75",
        "Longest Sequences (bp)": "174010",
        "N50 (bp)": "97682",
        "Gap Ratio (%)": "0.005732",
        "GCcontent (%)": "65.9",
        "Number of CDSs": "3683",
        "Average Protein Length": "288.5",
        "Coding Ratio (%)": "83.1",
        "Number of rRNAs": "3",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Halorussus litoreus",
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                "accession": "GCA_003382685.1",
                "taxid": 1710536,
                "species_taxid": 1710536,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1237,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Halorussus halobius",
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                "accession": "GCA_004765805.1",
                "taxid": 1710537,
                "species_taxid": 1710537,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.8254,
                "matched_fragments": 829,
                "total_fragments": 1243,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halorussus rarus",
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                "accession": "GCA_003369835.1",
                "taxid": 660515,
                "species_taxid": 660515,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 821,
                "total_fragments": 1243,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halorussus marinus",
                "strain": "strain=LYG-36",
                "accession": "GCA_004765795.1",
                "taxid": 2505976,
                "species_taxid": 2505976,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9619,
                "matched_fragments": 726,
                "total_fragments": 1243,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halorussus salinus",
                "strain": "strain=YJ-37-H",
                "accession": "GCA_004765815.2",
                "taxid": 1364935,
                "species_taxid": 1364935,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.881,
                "matched_fragments": 824,
                "total_fragments": 1243,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halorussus pelagicus",
                "strain": "strain=RC-68",
                "accession": "GCA_004087835.1",
                "taxid": 2505977,
                "species_taxid": 2505977,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6837,
                "matched_fragments": 725,
                "total_fragments": 1243,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halorussus amylolyticus",
                "strain": "strain=YC93",
                "accession": "GCA_004143485.2",
                "taxid": 1126242,
                "species_taxid": 1126242,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4531,
                "matched_fragments": 745,
                "total_fragments": 1243,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003382685.1",
                "gtdb_species": "s__Halorussus litoreus",
                "ani": 100.0,
                "matched_fragments": 1238,
                "total_fragments": 1243,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haladaptataceae;g__Halorussus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_004765805.1",
                "gtdb_species": "s__Halorussus sp004765805",
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                "matched_fragments": 830,
                "total_fragments": 1243,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haladaptataceae;g__Halorussus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003369835.1",
                "gtdb_species": "s__Halorussus rarus",
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                "matched_fragments": 822,
                "total_fragments": 1243,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haladaptataceae;g__Halorussus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_005239435.1",
                "gtdb_species": "s__Halorussus sp005239435",
                "ani": 82.0842,
                "matched_fragments": 802,
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haladaptataceae;g__Halorussus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004765795.1",
                "gtdb_species": "s__Halorussus sp004765795",
                "ani": 82.0033,
                "matched_fragments": 723,
                "total_fragments": 1243,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haladaptataceae;g__Halorussus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.88",
                "min_intra_species_ani": "98.88",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_004765815.2",
                "gtdb_species": "s__Halorussus salinus",
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                "matched_fragments": 821,
                "total_fragments": 1243,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haladaptataceae;g__Halorussus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004143485.2",
                "gtdb_species": "s__Halorussus amylolyticus",
                "ani": 81.4423,
                "matched_fragments": 747,
                "total_fragments": 1243,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haladaptataceae;g__Halorussus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Halorussus",
        "litoreus"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}