{ "type": "genome", "identifier": "GCF_003385115.1", "organism": "Flavobacterium aquicola", "title": "Flavobacterium aquicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003385115.1", "bioproject": "PRJNA224116", "biosample": "SAMN08778575", "wgs_master": "QUNI00000000.1", "refseq_category": "reference genome", "taxid": "1682742", "species_taxid": "1682742", "organism_name": "Flavobacterium aquicola", "infraspecific_name": "strain=DSM 100880", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/14", "asm_name": "ASM338511v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003385115.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/385/115/GCF_003385115.1_ASM338511v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5124726", "genome_size_ungapped": "5123728", "gc_percent": "34.000000", "replicon_count": "0", "scaffold_count": "47", "contig_count": "47", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003385115.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4366", "protein_coding_gene_count": "4288", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-14", "dateModified": "2018-08-14", "datePublished": "2018-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium aquicola" ], "sample_taxid": [ "1682742" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.427 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5124726", "Number of Sequences": "47", "Longest Sequences (bp)": "632649", "N50 (bp)": "400562", "Gap Ratio (%)": "0.019474", "GCcontent (%)": "34.2", "Number of CDSs": "4279", "Average Protein Length": "342.8", "Coding Ratio (%)": "85.9", "Number of rRNAs": "1", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium aquicola", "strain": "strain=DSM 100880", "accession": "GCA_003385115.1", "taxid": 1682742, "species_taxid": 1682742, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1679, "total_fragments": 1683, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium aquariorum", "strain": "strain=IMCC34762", "accession": "GCA_003254745.1", "taxid": 2217670, "species_taxid": 2217670, "relation_to_type": "type", "validated": true, "ani": 81.7879, "matched_fragments": 822, "total_fragments": 1683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium taihuense", "strain": "strain=NAS39", "accession": "GCA_019351435.1", "taxid": 2857508, "species_taxid": 2857508, "relation_to_type": "type", "validated": true, "ani": 81.4965, "matched_fragments": 836, "total_fragments": 1683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gilvum", "strain": "strain=EM1308", "accession": "GCA_000735535.1", "taxid": 1492737, "species_taxid": 1492737, "relation_to_type": "type", "validated": true, "ani": 80.7832, "matched_fragments": 655, "total_fragments": 1683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gilvum", "strain": "strain=EM1308", "accession": "GCA_001761465.1", "taxid": 1492737, "species_taxid": 1492737, "relation_to_type": "type", "validated": true, "ani": 80.7106, "matched_fragments": 687, "total_fragments": 1683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium laiguense", "strain": "strain=LB2P30", "accession": "GCA_003097655.1", "taxid": 2169409, "species_taxid": 2169409, "relation_to_type": "type", "validated": true, "ani": 80.3437, "matched_fragments": 676, "total_fragments": 1683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium fluvii", "strain": "strain=DSM 19978", "accession": "GCA_900129545.1", "taxid": 468056, "species_taxid": 468056, "relation_to_type": "type", "validated": true, "ani": 79.1737, "matched_fragments": 420, "total_fragments": 1683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium undicola", "strain": "strain=BBQ-18", "accession": "GCA_009909155.2", "taxid": 1932779, "species_taxid": 1932779, "relation_to_type": "type", "validated": true, "ani": 79.0714, "matched_fragments": 422, "total_fragments": 1683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium saccharophilum", "strain": "strain=DSM 1811", "accession": "GCA_900142735.1", "taxid": 29534, "species_taxid": 29534, "relation_to_type": "type", "validated": true, "ani": 78.9264, "matched_fragments": 521, "total_fragments": 1683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 78.715, "matched_fragments": 455, "total_fragments": 1683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 78.6907, "matched_fragments": 530, "total_fragments": 1683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium bizetiae", "strain": "strain=CIP 105534", "accession": "GCA_902804475.1", "taxid": 2704140, "species_taxid": 2704140, "relation_to_type": "type", "validated": true, "ani": 78.6105, "matched_fragments": 500, "total_fragments": 1683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium piscis", "strain": "strain=CCUG 60099", "accession": "GCA_001686925.1", "taxid": 1114874, "species_taxid": 1114874, "relation_to_type": "type", "validated": true, "ani": 78.5873, "matched_fragments": 545, "total_fragments": 1683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium bizetiae", "strain": "strain=CIP 105534", "accession": "GCA_904425415.1", "taxid": 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.326, "cell_length": 0.278, "doubling_h": 1.271, "growth_tmp": 24.705, "optimum_tmp": 25.047, "optimum_ph": 7.141, "genome_size": 5124726.0, "gc_content": 34.893, "coding_genes": 3154.048, "rRNA16S_genes": 5.145, "tRNA_genes": 58.611, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.347, "range_salinity": 0.333, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.789, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.21, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "aquicola" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }