{ "type": "genome", "identifier": "GCF_003385185.1", "organism": "Amycolatopsis palatopharyngis", "title": "Amycolatopsis palatopharyngis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Northumbria University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003385185.1", "bioproject": "PRJNA224116", "biosample": "SAMN08435654", "wgs_master": "PQHZ00000000.1", "refseq_category": "reference genome", "taxid": "187982", "species_taxid": "187982", "organism_name": "Amycolatopsis palatopharyngis", "infraspecific_name": "strain=DSM 44832", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/14", "asm_name": "ASM338518v1", "asm_submitter": "Northumbria University", "gbrs_paired_asm": "GCA_003385185.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/385/185/GCF_003385185.1_ASM338518v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7012383", "genome_size_ungapped": "7012383", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "131", "contig_count": "131", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003385185.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "6806", "protein_coding_gene_count": "6657", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-14", "dateModified": "2018-08-14", "datePublished": "2018-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Amycolatopsis palatopharyngis" ], "sample_taxid": [ "187982" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": 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"total_fragments": 2277, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Amycolatopsis marina", "strain": "strain=CGMCC 4.3568", "accession": "GCA_900111885.1", "taxid": 490629, "species_taxid": 490629, "relation_to_type": "type", "validated": true, "ani": 87.8207, "matched_fragments": 1634, "total_fragments": 2277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella muralis", "strain": "strain=DSM 45305", "accession": "GCA_003202285.1", "taxid": 588067, "species_taxid": 588067, "relation_to_type": "type", "validated": true, "ani": 80.715, "matched_fragments": 1015, "total_fragments": 2277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella muralis", "strain": "strain=DSM 45305", "accession": "GCA_007993965.1", "taxid": 588067, "species_taxid": 588067, "relation_to_type": "type", "validated": true, "ani": 80.7143, "matched_fragments": 1012, "total_fragments": 2277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis arida", "strain": "strain=DSM 45648", "accession": "GCA_004365925.1", "taxid": 587909, "species_taxid": 587909, "relation_to_type": "type", "validated": true, "ani": 80.3746, "matched_fragments": 1011, "total_fragments": 2277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis arida", "strain": "strain=CGMCC 4.5579", "accession": "GCA_900115565.1", "taxid": 587909, "species_taxid": 587909, "relation_to_type": "type", "validated": true, "ani": 80.3697, "matched_fragments": 1011, "total_fragments": 2277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis aidingensis", "strain": "strain=YIM 96748", "accession": "GCA_018885265.1", "taxid": 2842453, "species_taxid": 2842453, "relation_to_type": "type", "validated": true, "ani": 80.2747, "matched_fragments": 1021, "total_fragments": 2277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis cihanbeyliensis", "strain": "strain=DSM 45679", "accession": "GCA_006715045.1", "taxid": 1128664, "species_taxid": 1128664, "relation_to_type": "type", "validated": true, "ani": 80.1426, "matched_fragments": 991, "total_fragments": 2277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis nigrescens", "strain": "strain=CSC17Ta-90", "accession": "GCA_000384315.1", "taxid": 381445, "species_taxid": 381445, "relation_to_type": "type", "validated": true, "ani": 79.9385, "matched_fragments": 1004, "total_fragments": 2277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis anabasis", "strain": "strain=EGI 650086", "accession": "GCA_009765355.1", "taxid": 1840409, "species_taxid": 1840409, "relation_to_type": "type", "validated": true, "ani": 79.7588, "matched_fragments": 981, "total_fragments": 2277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis magusensis", "strain": "strain=DSM 45510", "accession": "GCA_017875555.1", "taxid": 882444, "species_taxid": 882444, "relation_to_type": "type", "validated": true, "ani": 79.6822, "matched_fragments": 958, "total_fragments": 2277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis thermalba", "strain": "strain=NRRL B-24845", "accession": "GCA_003385215.1", "taxid": 944492, "species_taxid": 944492, "relation_to_type": "type", "validated": true, "ani": 79.5013, "matched_fragments": 853, "total_fragments": 2277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis acidiphila", "strain": "strain=KCTC 39523", "accession": "GCA_021391495.1", "taxid": 715473, "species_taxid": 715473, "relation_to_type": "type", "validated": true, "ani": 79.4164, "matched_fragments": 877, "total_fragments": 2277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis saalfeldensis", "strain": "strain=DSM 44993", "accession": "GCA_900110575.1", "taxid": 394193, "species_taxid": 394193, "relation_to_type": "type", "validated": true, "ani": 79.3098, "matched_fragments": 871, "total_fragments": 2277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis sacchari", "strain": "strain=DSM 44468", "accession": "GCA_900114035.1", "taxid": 115433, "species_taxid": 115433, "relation_to_type": "type", "validated": true, "ani": 79.2723, "matched_fragments": 809, "total_fragments": 2277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis tolypomycina", "strain": "strain=DSM 44544", "accession": "GCA_900105945.1", "taxid": 208445, "species_taxid": 208445, "relation_to_type": "type", "validated": true, "ani": 79.1536, "matched_fragments": 903, "total_fragments": 2277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharomonospora amisosensis", "strain": "strain=DSM 45685", "accession": "GCA_011761185.1", "taxid": 1128677, "species_taxid": 1128677, "relation_to_type": "type", "validated": true, "ani": 79.0668, "matched_fragments": 696, "total_fragments": 2277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis camponoti", "strain": "strain=A23", "accession": "GCA_902497555.1", "taxid": 2606593, "species_taxid": 2606593, "relation_to_type": "type", "validated": true, "ani": 78.9463, "matched_fragments": 940, "total_fragments": 2277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis pretoriensis", "strain": "strain=DSM 44654", "accession": "GCA_900107925.1", "taxid": 218821, "species_taxid": 218821, "relation_to_type": "type", "validated": true, "ani": 78.8696, "matched_fragments": 911, "total_fragments": 2277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea aerocolonigenes", "strain": "strain=DSM 40034", "accession": "GCA_024171805.1", "taxid": 68170, "species_taxid": 68170, "relation_to_type": "type", 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