{ "type": "genome", "identifier": "GCF_003385455.1", "organism": "Chryseobacterium rhizosphaerae", "title": "Chryseobacterium rhizosphaerae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of the Free State", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003385455.1", "bioproject": "PRJNA224116", "biosample": "SAMN09519126", "wgs_master": "QNUF00000000.1", "refseq_category": "reference genome", "taxid": "395937", "species_taxid": "395937", "organism_name": "Chryseobacterium rhizosphaerae", "infraspecific_name": "strain=KCTC 22548", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/14", "asm_name": "ASM338545v1", "asm_submitter": "University of the Free State", "gbrs_paired_asm": "GCA_003385455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/385/455/GCF_003385455.1_ASM338545v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5267290", "genome_size_ungapped": "5267290", "gc_percent": "36.500000", "replicon_count": "0", "scaffold_count": "98", "contig_count": "98", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003385455.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4723", "protein_coding_gene_count": "4613", "non_coding_gene_count": "82", "pubmed_id": "20185262" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-14", "dateModified": "2018-08-14", "datePublished": "2018-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium rhizosphaerae" ], "sample_taxid": [ "395937" ], "sample_host_organism": [ "Leymus mollis" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Chungnam Province" ], "sample_host_location_id": [], "data_size": "1.479 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5267290", "Number of Sequences": "98", "Longest Sequences (bp)": "363292", "N50 (bp)": "148123", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.3", "Number of CDSs": "4527", "Average Protein Length": "329.5", "Coding Ratio (%)": "85.0", "Number of rRNAs": "3", "Number of tRNAs": "75", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium rhizosphaerae", "strain": "strain=KCTC 22548", "accession": "GCA_003385455.1", "taxid": 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"matched_fragments": 1142, "total_fragments": 1712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium cucumeris", "strain": "strain=GSE06", "accession": "GCA_001593385.1", "taxid": 1813611, "species_taxid": 1813611, "relation_to_type": "type", "validated": true, "ani": 82.6379, "matched_fragments": 1107, "total_fragments": 1712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium flavum", "strain": "strain=KCTC 12877", "accession": "GCA_003385595.1", "taxid": 415851, "species_taxid": 415851, "relation_to_type": "type", "validated": true, "ani": 82.542, "matched_fragments": 1050, "total_fragments": 1712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium nakagawai", "strain": "strain=NCTC13529", "accession": "GCA_900637665.1", "taxid": 1241982, "species_taxid": 1241982, "relation_to_type": "type", "validated": true, "ani": 82.3048, "matched_fragments": 1102, "total_fragments": 1712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium aureum", "strain": "strain=17S1E7", "accession": "GCA_003971235.1", "taxid": 2497456, "species_taxid": 2497456, "relation_to_type": "type", "validated": true, "ani": 82.3041, "matched_fragments": 1077, "total_fragments": 1712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium soli", "strain": "strain=DSM 19298", "accession": "GCA_000737705.1", "taxid": 445961, "species_taxid": 445961, "relation_to_type": "type", "validated": true, "ani": 80.5384, "matched_fragments": 842, "total_fragments": 1712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gwangjuense", "strain": "strain=THG-A18", "accession": "GCA_021311115.1", "taxid": 1069980, "species_taxid": 1069980, "relation_to_type": "type", "validated": true, "ani": 80.5199, "matched_fragments": 668, "total_fragments": 1712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 80.2176, "matched_fragments": 721, "total_fragments": 1712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ginsenosidimutans", "strain": "strain=THG 15", "accession": "GCA_024807225.1", "taxid": 687846, "species_taxid": 687846, "relation_to_type": "type", "validated": true, "ani": 80.1548, "matched_fragments": 728, "total_fragments": 1712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium fistulae", "strain": "strain=CECT 9393", "accession": "GCA_902729325.1", "taxid": 2675058, "species_taxid": 2675058, "relation_to_type": "type", "validated": true, "ani": 79.4459, "matched_fragments": 497, "total_fragments": 1712, "ani_threshold": 95, "status": "below_threshold" }, { 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