{ "type": "genome", "identifier": "GCF_003385895.1", "organism": "Flavobacterium cutihirudinis", "title": "Flavobacterium cutihirudinis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003385895.1", "bioproject": "PRJNA224116", "biosample": "SAMN05444268", "wgs_master": "QRDQ00000000.1", "refseq_category": "reference genome", "taxid": "1265740", "species_taxid": "1265740", "organism_name": "Flavobacterium cutihirudinis", "infraspecific_name": "strain=DSM 25795", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/14", "asm_name": "ASM338589v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003385895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/385/895/GCF_003385895.1_ASM338589v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4903770", "genome_size_ungapped": "4903255", "gc_percent": "34.000000", "replicon_count": "0", "scaffold_count": "15", "contig_count": "15", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003385895.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4135", "protein_coding_gene_count": "4055", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-14", "dateModified": "2018-08-14", "datePublished": "2018-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium cutihirudinis" ], "sample_taxid": [ "1265740" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.359 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4903770", "Number of Sequences": "15", "Longest Sequences (bp)": "1329119", "N50 (bp)": "1267602", "Gap Ratio (%)": "0.010502", "GCcontent (%)": "33.9", "Number of CDSs": "4050", "Average Protein Length": "353.3", "Coding Ratio (%)": "87.5", "Number of rRNAs": "6", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium cutihirudinis", "strain": "strain=DSM 25795", "accession": "GCA_003385895.1", "taxid": 1265740, "species_taxid": 1265740, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1625, "total_fragments": 1626, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium resistens", "strain": "strain=DSM 19382", "accession": "GCA_009674815.1", "taxid": 443612, "species_taxid": 443612, "relation_to_type": "type", "validated": true, "ani": 85.9012, "matched_fragments": 1141, "total_fragments": 1626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium resistens", "strain": "strain=DSM 19382", "accession": "GCA_900182645.1", "taxid": 443612, "species_taxid": 443612, "relation_to_type": "type", "validated": true, "ani": 85.8039, "matched_fragments": 1146, "total_fragments": 1626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium denitrificans", "strain": "strain=DSM 15936", "accession": "GCA_000425445.1", "taxid": 281361, "species_taxid": 281361, "relation_to_type": "type", "validated": true, "ani": 85.3556, "matched_fragments": 1152, "total_fragments": 1626, "ani_threshold": 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"strain": "strain=CCUG 59446", "accession": "GCA_002217355.1", "taxid": 728056, "species_taxid": 728056, "relation_to_type": "type", "validated": true, "ani": 83.638, "matched_fragments": 1031, "total_fragments": 1626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 83.4736, "matched_fragments": 1050, "total_fragments": 1626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium crocinum", "strain": "strain=HYN0056", "accession": "GCA_003122385.1", "taxid": 2183896, "species_taxid": 2183896, "relation_to_type": "type", "validated": true, "ani": 83.4247, "matched_fragments": 1056, "total_fragments": 1626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", 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37752, "species_taxid": 37752, "relation_to_type": "type", "validated": true, "ani": 82.8531, "matched_fragments": 1056, "total_fragments": 1626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium reichenbachii", "strain": "strain=DSM 21791", "accession": "GCA_002217435.1", "taxid": 362418, "species_taxid": 362418, "relation_to_type": "type", "validated": true, "ani": 82.7638, "matched_fragments": 961, "total_fragments": 1626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium ajazii", "strain": "strain=SSM4.2", "accession": "GCA_010614725.1", "taxid": 2692318, "species_taxid": 2692318, "relation_to_type": "type", "validated": true, "ani": 82.3862, "matched_fragments": 904, "total_fragments": 1626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium foetidum", "strain": "strain=JCM 32085", "accession": "GCA_004634245.1", "taxid": 2026681, "species_taxid": 2026681, 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